Transcript Information: S_Transcript_24896.p1


Annotated TAIR IDAT5G52960.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21477250-21478269 | Forward length=170
E-Value8E-62
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.5824752122581
Replicate 213.804650449395
Replicate 312.466877464333
Condition 2: 8 Hour
Replicate 117.87043881324
Replicate 216.872623275771
Replicate 318.100608022107
Condition 3: 24 Hour
Replicate 110.007153330887
Replicate 210.635531689459
Replicate 311.695137908518


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_24896.p1 GENE.S_Transcript_24896~~S_Transcript_24896.p1 ORF type:complete len:179 (+),score=37.32,DUF3143|PF11341.4|1.2e+04,DUF3143|PF11341.4|2.9e+03,DUF3143|PF11341.4|4.2e-22 S_Transcript_24896:87-623(+)
ATGTTGTCCATTAATTATTCTCTCTCAAACACTCTCACCAACATCAAAGATACCACCTTTACTTCTTTCCTATCATCAAACTCACCATCTTCTAGCCTCCAAAGGCATTATCATTATCTCGCAAAACATTTACAATTCCCCAAAACCCCACCATTTTCCAATCATAAATCCTCAAGAAAACATTATCTTTTCCTCTCAAAAGCTTCAGACTCAGAATCAGAAACAGAGCCTGTTGTTACACAAGAAGATGAGTGGCTGAGCAAATTGCCTGATAAAAAGAAGCCTTTGTATGCTCACAGCTTGCCTTGCGTTGAAGCTTGGCTTAGGAGCTTAGGGTTTTACCAAAGCAATGATGATAGGGCTGTTTGGTTCATTGAGAAATCTGATTGGCATGCTCAGCTTTCTCTTGATATGACTGATCTCTATATAAGATATTTGAAGAGTGGACCTGCCAATTTAGAGAAAGATGTGGAGAGGAGATTCAGTTATGCGCTGAGTAGAGAGGATATTGAGAATGCTGTGCTCGGAGGACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_24896.p1 GENE.S_Transcript_24896~~S_Transcript_24896.p1 ORF type:complete len:179 (+),score=37.32,DUF3143|PF11341.4|1.2e+04,DUF3143|PF11341.4|2.9e+03,DUF3143|PF11341.4|4.2e-22 S_Transcript_24896:87-623(+)
MLSINYSLSNTLTNIKDTTFTSFLSSNSPSSSLQRHYHYLAKHLQFPKTPPFSNHKSSRKHYLFLSKASDSESETEPVVTQEDEWLSKLPDKKKPLYAHSLPCVEAWLRSLGFYQSNDDRAVWFIEKSDWHAQLSLDMTDLYIRYLKSGPANLEKDVERRFSYALSREDIENAVLGGP*

Click here to download the sequence:
Link to NCBI Protein BLAST