Transcript Information: S_Transcript_249652.p1


Annotated TAIR IDAT1G50120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:18562302-18566015 | Forward length=532
E-Value1E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.68238464705591
Replicate 20.45257004220543
Replicate 30.37831253504822
Condition 2: 8 Hour
Replicate 10.87488780788238
Replicate 20.80309200245172
Replicate 30.65587223399943
Condition 3: 24 Hour
Replicate 10.11202504354151
Replicate 20.697348048503
Replicate 30.51737526984853


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_249652.p1 GENE.S_Transcript_249652~~S_Transcript_249652.p1 ORF type:internal len:195 (-),score=26.51 S_Transcript_249652:3-584(-)
CGAAATCACTCCTCCCAATTCCTACAGTACATCTCTCTGTCTCATTACATTAATCCCATCCTTCTTCCCAAATTTCCACCACCTCCATTTCCAGATTGCACCAAAAAAACCACCTCCATTTCCAGATCCAACCCTATCCTCCATTTTCACGAGATCGAAATGCCACCACCTGAAAATCTAAGCAGAAGATTTTCATTCTTCGGGTTCGGTGATTCAAGCAGCAGTAAAGTAGATTCAAGAACCTCATCTTCAATCATCAACAACGATCAACAAGAATTGGTGCCAATTTTGAAGCTTCAAACTGATAAAAATGTGTACAGGCCTAGCGACGAGGTTTCGGTGATCATTGAGATTCAAAGCCCTCGCGATCCTACCGAATCGAATCGGAATGAGATTAGGAGCAGCTCAGAGCGTTCTCTTTTGGTCGAGCAACTCAGTTTCGAGCTCAAAGGTGTTGAGAAACTTGATTCTCAATGGTTCTCCACTCCCAAACCCTTGCCTGGAGTTAAACATCGTCGAGGCGAGCATGTTTTCTTGGATTCTTCTACAACATCATTAGTTTCAAATCAAATCATTTCATCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_249652.p1 GENE.S_Transcript_249652~~S_Transcript_249652.p1 ORF type:internal len:195 (-),score=26.51 S_Transcript_249652:3-584(-)
RNHSSQFLQYISLSHYINPILLPKFPPPPFPDCTKKTTSISRSNPILHFHEIEMPPPENLSRRFSFFGFGDSSSSKVDSRTSSSIINNDQQELVPILKLQTDKNVYRPSDEVSVIIEIQSPRDPTESNRNEIRSSSERSLLVEQLSFELKGVEKLDSQWFSTPKPLPGVKHRRGEHVFLDSSTTSLVSNQIISS

Click here to download the sequence:
Link to NCBI Protein BLAST