Transcript Information: S_Transcript_249810.p1


Annotated TAIR IDAT5G46460.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18840305-18842398 | Forward length=697
E-Value4.2E-208
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.83716394613978
Replicate 20.65750035105177
Replicate 30.58015229402055
Condition 2: 8 Hour
Replicate 13.3188521354478
Replicate 23.5928299967773
Replicate 33.8114429492351
Condition 3: 24 Hour
Replicate 10.97650969246034
Replicate 20.45027440217909
Replicate 30.83516703328199


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_249810.p1 GENE.S_Transcript_249810~~S_Transcript_249810.p1 ORF type:complete len:604 (+),score=75.93,PPR_2|PF13041.2|0.00047,PPR_2|PF13041.2|8.5e-05,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|2.7e-11,PPR_2|PF13041.2|5.7e+02,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|17,PPR|PF01535.16|0.0015,PPR|PF01535.16|7.6e-06,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|1.5e-08,PPR|PF01535.16|0.0055,PPR|PF01535.16|70,PPR|PF01535.16|18,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|0.22,PPR|PF01535.16|0.00066,PPR|PF01535.16|0.094,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.46,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|0.027,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|98,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|12,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|1.3e+03,PPR_3|PF13812.2|0.37,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|56,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|16,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6 S_Transcript_249810:117-1928(+)
ATGCCAAGAGTTCCGGCCATTATTCCACATAGTCTCAGGCTTTCTTCCGAATTTCTATCAAATCCCATTCACCCCTTCATTTTTCAGGAACCAAAGACTACCCTTTTCAAGGGGCCATATATATTGTCCCAAAAAACTCATCTTTACTCTTCAATTTCTTACCACATAAGAAACATAGTCTTAGACAAAGCCCATCATATTTTTGAGAAAATCCCTACTCCAAATGTGCATGTATGTACCAAAATGATCACTGCTTATGCCAAAAACTATAGACTCCAAGATGCACTCCAAGTGTTCGATAAAATGCTTGTGAGAGATACAGTTACATGGAATTCAATGATTAAAGGGTGTTTAGATTGTGGGGATTTAATAACAGCTAGGAAGCTCTTTGATAGGATACCTGAGAGAAATGTCATTGCTTGGACTACAATGATTAATGGGTACATGAAATTTGGGAAGGTAGATGTTGCTCAAGAATTGTTTAGGGTTATGCCTGTTAAGGATATTGCAGCTTGGAATTGTATGATTTTTGGGTATTGTACTAATGGTAGAGTTGATGAGGCTTTCAAGGTTTTTGAACAAATGCCATGTAGGAATGTAATCTCATGGACGTCGATGATTAGTGGGCTTGATCAAAATGAGAGGAGTAATGATTCCTTAAGACTGTTCCAAGAGATGGTTGGATATGGTGTTGAGCCAACTATAAGCACCTTTTCCTGTCTTATATCAGCTTGTGCGAAAGTACCGGCATTGGAGCTGGGTATGCAGATTCATGCTCGCGTCATGAAGTTGGGGCTTGGTTGGGATGAATTTGTAGCTTCGTCGTTAATAACATTGTATGCCAATTGCAAGCAATTAGAAAATTCTTGCAAGGTTTTTAGTGAGAAGGTGCATAATAGTGTGGTTGTATGGACCTCCCTCTTGACAGGGTTCAGTTCGAACTTGAAGCATGAGGGTGCATTGGAAGTTTTTAGTGAGATGATCCGAAGGGGTATTTTCCCTAATGAATCATCTTTCACCAGTGCCTTGAACTCTTGTTGTGCATTATTGTCTATAGATAGAGGAAAGATGATTCATGCAGAAGCTATCAAGGCAGGACATGAGGCTTATGCTTTTGTGGGCAATTCAATGATCACCTTCTATTCTAAATGTGGAGTCATTCAAGATGCAGTGAAGGCATTTGAAGGCATAAAAGAGAAAAATCTCGTCTCTTGGAATTCAATTATTGTTGGATGTGCTCAATGTGGGTGTGGTATGTGGGCACTCACTCTCTTTACCCAGATGCTATGTCTTGGGGTAGAACCTGACGAAATTACTTTCACTGGGTTGCTCTATGCTTCTAATAATTCTCGAATGTATCCAAAAGGAAGGCGTTTCTTTCAATATTTCAGTAAGTACACGTCGATAAAAATGAGCCTTCAGCACTATGCATGTATGGTGGATATCATCTGTCGTAGTGGGAACCTAGATGAAGCCGAAGATTTTATCATGAAGATGCCAATAAAGGCAAATTCGCTTGTGTGGTTAACTCTGCTTAATGCATGTACCATGAACTCTAATTTTGAAATAGCGGAAAGAGCTTCAAAGTTTATCCTTGATCTAGACCCACAGTGTAGTGCAGCTTACACTCTATTGTCTAATATTTATGCATCAGCTGGTAGATGGGATGATGTCTCAAGGATAAGATCAGATATGAAAATGAGAGATGTTGCAAAGCAGCAAGGACATAGCTGGTTGACTCCAAAGGGAGAAAGACATGAAACAAACCCAATCAGTCGACAGGACAATTGGATCGGCTTGAGTGAAGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_249810.p1 GENE.S_Transcript_249810~~S_Transcript_249810.p1 ORF type:complete len:604 (+),score=75.93,PPR_2|PF13041.2|0.00047,PPR_2|PF13041.2|8.5e-05,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|1.6e-09,PPR_2|PF13041.2|2.7e-11,PPR_2|PF13041.2|5.7e+02,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|1.3e-06,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|17,PPR|PF01535.16|0.0015,PPR|PF01535.16|7.6e-06,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|1.5e-08,PPR|PF01535.16|0.0055,PPR|PF01535.16|70,PPR|PF01535.16|18,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|0.22,PPR|PF01535.16|0.00066,PPR|PF01535.16|0.094,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.46,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|0.027,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|98,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|12,PPR_1|PF12854.3|15,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|1.3e+03,PPR_3|PF13812.2|0.37,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|56,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|16,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|3.6,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6 S_Transcript_249810:117-1928(+)
MPRVPAIIPHSLRLSSEFLSNPIHPFIFQEPKTTLFKGPYILSQKTHLYSSISYHIRNIVLDKAHHIFEKIPTPNVHVCTKMITAYAKNYRLQDALQVFDKMLVRDTVTWNSMIKGCLDCGDLITARKLFDRIPERNVIAWTTMINGYMKFGKVDVAQELFRVMPVKDIAAWNCMIFGYCTNGRVDEAFKVFEQMPCRNVISWTSMISGLDQNERSNDSLRLFQEMVGYGVEPTISTFSCLISACAKVPALELGMQIHARVMKLGLGWDEFVASSLITLYANCKQLENSCKVFSEKVHNSVVVWTSLLTGFSSNLKHEGALEVFSEMIRRGIFPNESSFTSALNSCCALLSIDRGKMIHAEAIKAGHEAYAFVGNSMITFYSKCGVIQDAVKAFEGIKEKNLVSWNSIIVGCAQCGCGMWALTLFTQMLCLGVEPDEITFTGLLYASNNSRMYPKGRRFFQYFSKYTSIKMSLQHYACMVDIICRSGNLDEAEDFIMKMPIKANSLVWLTLLNACTMNSNFEIAERASKFILDLDPQCSAAYTLLSNIYASAGRWDDVSRIRSDMKMRDVAKQQGHSWLTPKGERHETNPISRQDNWIGLSEA*

Click here to download the sequence:
Link to NCBI Protein BLAST