Transcript Information: S_Transcript_250093.p1


Annotated TAIR IDAT5G53740.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21811633-21814908 | Forward length=275
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.17510150442472
Replicate 30
Condition 2: 8 Hour
Replicate 10.16924912950106
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.1798715204472
Replicate 30.20017495559616


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_250093.p1 GENE.S_Transcript_250093~~S_Transcript_250093.p1 ORF type:5prime_partial len:126 (-),score=2.49 S_Transcript_250093:16-393(-)
ATTACAGCACTGGTCCTTTCCCTTCAAATCTTGTGGGATCAAATTCCTCCGGATTTCCTATCAAAAAAAAATTCCTCTGGATTTGGAAAGTATTTTGGGTTTTTATTTATTAATTTTTTTTTTGATGATGATATCCAATGGAAGGGAGTCTGTCAGACAACCGTGCGACCATCCCAGGCCACCCCCCGTAGGGGCTTGGGAACGATCCTCTACTGCCCCAGAGATCCACAAGGATCAATGGCAGCTGTTAATCACGCTCTGATCGCACGGTCATGGTTCATCCACCAGACTTGGTTTCCTGTCTCCTTAGAACTCAAGGATACAGAGGTACGAGCCTATAGAACAGATCCTGTTCAAGTGTCCAGTGTACCTGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_250093.p1 GENE.S_Transcript_250093~~S_Transcript_250093.p1 ORF type:5prime_partial len:126 (-),score=2.49 S_Transcript_250093:16-393(-)
ITALVLSLQILWDQIPPDFLSKKNSSGFGKYFGFLFINFFFDDDIQWKGVCQTTVRPSQATPRRGLGTILYCPRDPQGSMAAVNHALIARSWFIHQTWFPVSLELKDTEVRAYRTDPVQVSSVPV*

Click here to download the sequence:
Link to NCBI Protein BLAST