Transcript Information: S_Transcript_250735.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value1E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21813935438672
Replicate 21.0850552241401
Replicate 30.4535099036951
Condition 2: 8 Hour
Replicate 10
Replicate 20.3667516170447
Replicate 30.34944012467183
Condition 3: 24 Hour
Replicate 10
Replicate 20.18576894734711
Replicate 30.41347613778879


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_250735.p1 GENE.S_Transcript_250735~~S_Transcript_250735.p1 ORF type:complete len:122 (-),score=18.61,UBN2_3|PF14244.2|6.4e-11 S_Transcript_250735:106-471(-)
ATGTCAGACCCAAAAACACCAGCAGCCTTCTTTGTCTCCAACATCAAGACTTTAATTCCCATCCTCTTTGACTTTTCTGATAGTGACTATGAAACTTGGAAGGAATTATTTGAAACTCACGCAACGAGTTTTGATGTCCTGGGTCACCTTGATGGTGCTTCCATGCCGAGTACTGCTACTGAAGTCGCTTGGAAACGACTTGACTCACTTGTCAAGTCATGGATATATGCCACTATATCTCCCACTCTTTTTCGTGTGGTCGTTACCGGGTCAAAACCTACTGCTCACACAATATGGACAAATATTCAGAACCTCTTCCGTGACAACAAAGAGGCTCAATCTGTTGCCTTAGAGCATGAATACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_250735.p1 GENE.S_Transcript_250735~~S_Transcript_250735.p1 ORF type:complete len:122 (-),score=18.61,UBN2_3|PF14244.2|6.4e-11 S_Transcript_250735:106-471(-)
MSDPKTPAAFFVSNIKTLIPILFDFSDSDYETWKELFETHATSFDVLGHLDGASMPSTATEVAWKRLDSLVKSWIYATISPTLFRVVVTGSKPTAHTIWTNIQNLFRDNKEAQSVALEHEY*

Click here to download the sequence:
Link to NCBI Protein BLAST