Transcript Information: S_Transcript_250737.p3


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value4E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.91140415188974
Replicate 21.3600349727235
Replicate 30.75792066096989
Condition 2: 8 Hour
Replicate 10
Replicate 20.91939103998877
Replicate 31.167991649588
Condition 3: 24 Hour
Replicate 10
Replicate 20.31046317227873
Replicate 30.34550745760433


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_250737.p3 GENE.S_Transcript_250737~~S_Transcript_250737.p3 ORF type:complete len:146 (+),score=12.94,UBN2_3|PF14244.2|1.3e-12 S_Transcript_250737:155-592(+)
ATGTCAGACCCAAAAACACCAGCAGCCTTCTCTGTCTCCAACTTCAAGACTTTTATTCCCATCCTCTTGGACTTTTCTGATAGTGACTATGGAACTTGGAAGGAATTATTTGAAACTCACGCAACGAGTTTTGATGTCCTGGGTCACCTTGACGGTACTTCCGTGCCGAGTACTGCTACTGAAGTCGCTTGGAAACGACTTGACTCACTTGTCAAGTCATGGATATATGCCACTATATCTCCCACTCTTTTTCGTGTGGTCGTTACCGGGTCAAAACCTACTGCTCACACAATATGGACAAATATTCAGAACCTCTTCCGTGACAACAAAGAGGCTCGATCTGTTGCCTTAGAGCATGAATTTCGAACCCTTCAGCTTGGTGATCAATCTGCGTCAACGATTTGCGACCTACATATGTCGTCTTGGGTTTGTGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_250737.p3 GENE.S_Transcript_250737~~S_Transcript_250737.p3 ORF type:complete len:146 (+),score=12.94,UBN2_3|PF14244.2|1.3e-12 S_Transcript_250737:155-592(+)
MSDPKTPAAFSVSNFKTFIPILLDFSDSDYGTWKELFETHATSFDVLGHLDGTSVPSTATEVAWKRLDSLVKSWIYATISPTLFRVVVTGSKPTAHTIWTNIQNLFRDNKEARSVALEHEFRTLQLGDQSASTICDLHMSSWVCG*

Click here to download the sequence:
Link to NCBI Protein BLAST