Transcript Information: S_Transcript_250742.p3


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.60829717108984
Replicate 20.75643849911479
Replicate 30.31616119000458
Condition 2: 8 Hour
Replicate 10.6092968662038
Replicate 20.76703481050491
Replicate 30.97443874765629
Condition 3: 24 Hour
Replicate 11.4979348679265
Replicate 21.5540899366638
Replicate 30.86475580817541


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_250742.p3 GENE.S_Transcript_250742~~S_Transcript_250742.p3 ORF type:complete len:175 (+),score=11.34,UBN2_3|PF14244.2|2.7e-06 S_Transcript_250742:336-860(+)
ATGCATTTGCTGTTTCCAACATCAAGACATACATTTCCATCACTTTGGATCTCTCTGACCCCGACTATGAGACATGGAAGGAGCTTTTTGAGACACATGCCACTACCTTCGATGTCCTCGGTCATCTCGACGGCACGTCTGCACCGACCTCGGATACCGATAAATGACTGGAAACGTCTTGGTTCTCTGGTCAAGACTTGGCTTTATGGCACCATATCTCCCACTCTTTTTCGTATGGTTGTCATTGGTAAGAAACCTACTGCTCGTCAAATTTGGGTTAATATTGAATCGCTTTTCCGTGATAACAAAGATGCACGTTCTGTGTGCTTGGAAAATGAGTTTCGCACTCTCAGAATGGGTGATCTCTCTGCCAGTGATTATTGCCACCAACATGGCTTGACGCCAAGGTGGGTCTTGAAGAGCTTGGGCTACAGTAATGGATTTAGCGAGGTTGGGTTGAGTAATAAAAGGTGCATGAGAAATCAATTGATCAGAATGGTATTGAAATATGCCAGGAGCATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_250742.p3 GENE.S_Transcript_250742~~S_Transcript_250742.p3 ORF type:complete len:175 (+),score=11.34,UBN2_3|PF14244.2|2.7e-06 S_Transcript_250742:336-860(+)
MHLLFPTSRHTFPSLWISLTPTMRHGRSFLRHMPLPSMSSVISTARLHRPRIPINDWKRLGSLVKTWLYGTISPTLFRMVVIGKKPTARQIWVNIESLFRDNKDARSVCLENEFRTLRMGDLSASDYCHQHGLTPRWVLKSLGYSNGFSEVGLSNKRCMRNQLIRMVLKYARSM*

Click here to download the sequence:
Link to NCBI Protein BLAST