Transcript Information: S_Transcript_251278.p1


Annotated TAIR IDAT1G49230.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:18209320-18209979 | Forward length=219
E-Value6E-35
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.144821992245
Replicate 211.731800796456
Replicate 316.759470488669
Condition 2: 8 Hour
Replicate 115.824793608349
Replicate 219.53097897119
Replicate 321.823367786052
Condition 3: 24 Hour
Replicate 14.8544185534654
Replicate 22.698072806708
Replicate 36.2054236234809


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_251278.p1 GENE.S_Transcript_251278~~S_Transcript_251278.p1 ORF type:5prime_partial len:252 (+),score=14.83,zf-RING_2|PF13639.2|5.2e+03,zf-RING_2|PF13639.2|1.6e-15,zf-RING_11|PF17123.1|1.6e+04,zf-RING_11|PF17123.1|1.2e-12,zf-rbx1|PF12678.3|3.3e+03,zf-rbx1|PF12678.3|8e-09,zf-C3HC4|PF00097.21|7.4e+03,zf-C3HC4|PF00097.21|5e-07,zf-C3HC4_2|PF13923.2|5.6e+02,zf-C3HC4_2|PF13923.2|1.8e-06,zf-ANAPC11|PF12861.3|1.6e+04,zf-ANAPC11|PF12861.3|6.2e-06 S_Transcript_251278:1-756(+)
CCTAATCAACACTTTCTAAGACAATTAACTCCAAATCACTTAAAATTCATATCCACAAAACAAAACATGTTGCCTTCAACTTCCTCTAGTTTTGAACTTCCACAAACAATTTTAGCCAACATTCAATATTATCCTAGAAGGTTGCTCTCAGAAACTCCACTATACCATTTAAAACCAACAACACCACCAGCACCTCCACCAAATGACCTACTACTAGACCACTCCTCGGCGCGTGGTGATTTTAATGCAAACTTAATCATGGTTGTTACGGTCCTATTATGCGCCTTAATCTGCTCGTTATGCATTAGTTGCATAATTAGGTGCGTGATTAAGTGCACGAGCTTGATCAACCAAGAGCCTAACTACAACATAAACACAATTAGCCATGAGGTGATAATTACCAAAAGTGGCATAGATAAGAGGGCATTGAGGACATTTCCTATAGTGAAGTACTCAAAAGAGGTCAAGATTCAGGGGTTAGACACAGACTGTGTGATATGCTTGTCAGAGTTTAAGGGAGGAGAGAAACTAAGGATTTTGCCCAAATGCAACCATGGTTTCCATGTTAAGTGCATTGATAAGTGGCTTAATTCTCACTCATCTTGCCCTACTTGCAGGCAGTCTTTGGTTGACACTTGTCAGAAGATCATTGGTTCTGATGATCATCAAACAGGGGAGATGGTTACTATAAGTATTGTGCGACTAGAAAGGGAAGATTTGGTCAGAAATTATAGGGGACAAGTTTCTCAAACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_251278.p1 GENE.S_Transcript_251278~~S_Transcript_251278.p1 ORF type:5prime_partial len:252 (+),score=14.83,zf-RING_2|PF13639.2|5.2e+03,zf-RING_2|PF13639.2|1.6e-15,zf-RING_11|PF17123.1|1.6e+04,zf-RING_11|PF17123.1|1.2e-12,zf-rbx1|PF12678.3|3.3e+03,zf-rbx1|PF12678.3|8e-09,zf-C3HC4|PF00097.21|7.4e+03,zf-C3HC4|PF00097.21|5e-07,zf-C3HC4_2|PF13923.2|5.6e+02,zf-C3HC4_2|PF13923.2|1.8e-06,zf-ANAPC11|PF12861.3|1.6e+04,zf-ANAPC11|PF12861.3|6.2e-06 S_Transcript_251278:1-756(+)
PNQHFLRQLTPNHLKFISTKQNMLPSTSSSFELPQTILANIQYYPRRLLSETPLYHLKPTTPPAPPPNDLLLDHSSARGDFNANLIMVVTVLLCALICSLCISCIIRCVIKCTSLINQEPNYNINTISHEVIITKSGIDKRALRTFPIVKYSKEVKIQGLDTDCVICLSEFKGGEKLRILPKCNHGFHVKCIDKWLNSHSSCPTCRQSLVDTCQKIIGSDDHQTGEMVTISIVRLEREDLVRNYRGQVSQT*

Click here to download the sequence:
Link to NCBI Protein BLAST