Transcript Information: S_Transcript_251538.p1


Annotated TAIR IDAT2G39580.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:16510540-16516948 | Forward length=1577
E-Value2E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5944832837127
Replicate 24.2979460176977
Replicate 34.2633857440012
Condition 2: 8 Hour
Replicate 14.5974218086287
Replicate 26.5662828475042
Replicate 36.588534714267
Condition 3: 24 Hour
Replicate 14.5959365265925
Replicate 25.8867043055448
Replicate 32.817007556935


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_251538.p1 GENE.S_Transcript_251538~~S_Transcript_251538.p1 ORF type:3prime_partial len:385 (-),score=100.31 S_Transcript_251538:3-1154(-)
ATGCCAGAAGAGAAGGATGAGCTAAAACCGAAAGCTATGGCGTCAATTTCAGAACCACCCCAGAACCCTAATCCCAATAATAAGCCCAATCCCCCTTCTAAGGTCAGAGAAGAAGGAGAGCTCCCTTCATCTGACGACGATGTCGATGCACCCCCTGCTGCTTCAGTTGCTCCATCAACTTGTATTTCTGCTCCTCCATCCAGTTCTGTTCCAAATGCTTCAGTGAAATCTAGTGTGCAAGTTGTTAACTCAGGAAAGTCAGTTTCCGCAAATCTTCCTGCTAGAACCGCTGAAACACAGTCCCAGACACCTGGGTATCGCAAAGGCTTTAGTAAGAACCAAATATCATTGAAGCCAAGTAATCCTGGATGGTGTGCTCCTGGTGCGGATAATAATCTTGTGATTAGTTTCTCAGATGATGATGATAGTGGTAGTGATGGGGAAGAAAGAAAACAAAATAAAGGTCAAAGAACTGATGGGCACCTTCGAGTGGTGAAAAGCAATCGAAAACCACCTGCCTTGCCCAAAGTGAAATTGGACTTTGCAGGAAGAACTGCAAAAAAGGTAGCACAAAAGAAGGTGTCATTAAGTCGTACATTTGCCTCATCAGCTGCCAAGACCGATGGTCCCAGTGTAAGAAGTGATGGGTCATCCTTAGCTGAGCAGCGATCTTGGTTGATCAGTACCAATGTGGCCGATAGGATTTCATCAATCCAAGATCGTGGAAGGAAAAGTGTGGATCTGAGCAGTAGCAAACTTCAGGACTTACGCCAACAGATTGCCATGCGTGAGAACGAAATGAAACGTAAAATAATGCAGAAAAATAAGGAAAATATCCCAGATGCTTGCAGAGATGTCAAAGTTATGGGCCAGAACAAACTGCCATCTAAGAAAAGCAGGGCACTTCCTTCTGATCTACATACCGAGCTTGAAGAGCCTGATAGAAAACGCCTAAAAAATGCTCAATATGGTTCTGAACAACCAAGTTCCAGTGGCCAGCATTTGAAACTTGCAGAACCAATGTCAGTGCGGAATGAGACACTGAGAGGACATTTAGTTGATCATGCCAATTTTGACACAGATAATTTGCAGAGGGAACTGATGCCATTGTCTGATGGAAGACAGTTTTCATCCACATCACAATCTCATTCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_251538.p1 GENE.S_Transcript_251538~~S_Transcript_251538.p1 ORF type:3prime_partial len:385 (-),score=100.31 S_Transcript_251538:3-1154(-)
MPEEKDELKPKAMASISEPPQNPNPNNKPNPPSKVREEGELPSSDDDVDAPPAASVAPSTCISAPPSSSVPNASVKSSVQVVNSGKSVSANLPARTAETQSQTPGYRKGFSKNQISLKPSNPGWCAPGADNNLVISFSDDDDSGSDGEERKQNKGQRTDGHLRVVKSNRKPPALPKVKLDFAGRTAKKVAQKKVSLSRTFASSAAKTDGPSVRSDGSSLAEQRSWLISTNVADRISSIQDRGRKSVDLSSSKLQDLRQQIAMRENEMKRKIMQKNKENIPDACRDVKVMGQNKLPSKKSRALPSDLHTELEEPDRKRLKNAQYGSEQPSSSGQHLKLAEPMSVRNETLRGHLVDHANFDTDNLQRELMPLSDGRQFSSTSQSHS

Click here to download the sequence:
Link to NCBI Protein BLAST