Transcript Information: S_Transcript_252486.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value6E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.12213732505696
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.75045733696515
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_252486.p1 GENE.S_Transcript_252486~~S_Transcript_252486.p1 ORF type:5prime_partial len:151 (+),score=19.86,Rhamnogal_lyase|PF06045.7|5e-34 S_Transcript_252486:2-454(+)
AATGTAAGAGTTGAAAAAGAATCATACTACTATAGGAGCAGCTCCCAGGAAGTGCAAGGACAATATCAAAGGGTGCAGCTTCAATACCACGATAACTATATTGTGTTGGACAACGGCATACTCCAAGTGACGTTACAAAATCCTCAGGGAAGTGTCACTAATATTCGTTACAATGGCATCACAAATTTGCTCGAAGAACTCAATGATGAAACCAATAGAGGGTACTGGGATGTTGTTTGGAAGGGAGAAGGAGTTACAAGAAAAAAGGGTAACATTGACAGGCTGGAGGGCACAGATATGAAGGTTATGGTGGAAACAGATGAGCAAGTTGAAATCTCCTTTACAAGATCATGGAACTCTTCCCTCTCTGGTTCATTATGCTACGTGGCTCGTCTGGCTTTTACACTTATGCCATATACGAACGCCCCAAAGAATTTCCTGGTTTCACTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_252486.p1 GENE.S_Transcript_252486~~S_Transcript_252486.p1 ORF type:5prime_partial len:151 (+),score=19.86,Rhamnogal_lyase|PF06045.7|5e-34 S_Transcript_252486:2-454(+)
NVRVEKESYYYRSSSQEVQGQYQRVQLQYHDNYIVLDNGILQVTLQNPQGSVTNIRYNGITNLLEELNDETNRGYWDVVWKGEGVTRKKGNIDRLEGTDMKVMVETDEQVEISFTRSWNSSLSGSLCYVARLAFTLMPYTNAPKNFLVSL*

Click here to download the sequence:
Link to NCBI Protein BLAST