Transcript Information: S_Transcript_252487.p1


Annotated TAIR IDAT1G09890.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3214237-3217386 | Reverse length=617
E-Value3.8E-289
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5450218423907
Replicate 20.73649370075884
Replicate 30.77625449408478
Condition 2: 8 Hour
Replicate 10.64997561198809
Replicate 20.68187056811939
Replicate 31.0209331944331
Condition 3: 24 Hour
Replicate 10.79263002505784
Replicate 20.92102572443792
Replicate 30.87856177898808


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_252487.p1 GENE.S_Transcript_252487~~S_Transcript_252487.p1 ORF type:complete len:689 (+),score=108.25,Rhamnogal_lyase|PF06045.7|7.4e-81,CBM-like|PF14683.2|8.9e-54,fn3_3|PF14686.2|5.1e+03,fn3_3|PF14686.2|1.4e+04,fn3_3|PF14686.2|2.1e-29,fn3_3|PF14686.2|1.6e+04 S_Transcript_252487:258-2324(+)
ATGATGGTGATGATTATGCAAGGAGCTCGATTTTGCCTCATAATTTTGGTTTTGGTTAATCTCATCAGTAAACATGATGCTTATACTAACAGGAATGTAAGAGTTGAAAAAGAATCATACTACTATAGGAGCAGCTCCCAGGAAGTGCAAGGACAATATCAAAGGGTGCAGCTTCAATACCACGATAACTATATTGTGTTGGACAACGGCATACTCCAAGTGACGTTACAAAATCCTCAGGGAAGTGTCACTAATATTCGTTACAATGGCATCACAAATTTGCTCGAAGAACTCAATGATGAAACCAATAGAGGGTACTGGGATGTTGTTTGGAAGGGAGAAGGAGTTACAAGAAAAAAGGGTAACATTGACAGGCTGGAGGGCACAGATATGAAGGTTATGGTGGAAACAGATGAGCAAGTTGAAATCTCCTTTACAAGATCATGGAACTCTTCCCTCTCTGGCAAGCTTCCCCCTTTGAACATTGACAAAAGATTCATTATGCTACGTGGCTCGTCTGGCTTTTACACTTATGCCATATACGAACGCCCCAAAGAATTTCCTGGTTTCACTTTAGCCAACACTCGGCTTGCCTTCAAGCTAAACAAATTATGGTTTAACTATATGGCAATGGCAGATGACAGGCAAAGACAATTGCCTCTTCCTGAGGACCGCTTACCCAACAGAAGCCAACCCTTAGCTTACCCTGAAGCTGTGTTACTCACCAACCCAATTGAGCCAGAGTTCAAAGGAGAGGTTGATGACAAATACCAATACTCAGGTGAAGCCAAAGACATACAAGTACATGGATGGATTTGCAGTGATCCACCAACTGGCCTTTGGCAGATCATACCAAACAATGAGTTCCGATCTGCGGGACCAACCAAACAATACCTTACCTCACATGTGGGTCCCACATCCCTCTCGGTGCTGCTAAGTACTCACTACTCAGGTGCGGAACTAATGGCGACATTTGAAGATGGAGAGCCTTGGAAGAAAGTCCTCGGACCGCTTTTTGTGTATGCAAATTCTGTGCCAAAGGCTGATGATTGGCACCAACTTTGGGATGATGCAAAACAACAGCTGAATGTTGAATCGAAAAGCTGGCCTTACAGTTTTGCAGTTTCAGATGACTTCCCGTCATCTGATCAGCGTGGAAGCGTTAGTGGTAGCTTGCTAATCCATGAAAAGTACCTAAAGGCTATAAAGTCAGCTTCTGCAGCATTCATAGGCCTTGCTGCACCAGGTGAAGTTGGATCATGGCAAAGAGAAAGCAAGGGATATCAATTCTGGACAAGAACAGATGGTGAAGGGCATTTCATCATCAAGAATGTACGCCCTGGCAGCTACGATCTCTATGGTTGGGTTCCGGGTTTCATTGGAGATTATAAATACAATGGCACCCTTAACATAGTAGCAGGACATGATGTTGAATTGGGTGAACTTGTATATGAACCTCCAAGAGATGGACCTACTCTATGGGAGATTGGAGTACCTGATCGTTCTGCTGCTGAATTCTTTGTTCCTGATCCTGATCCTAAGCTTGTTAATAAGCTTTATCTTACTCATGATAAGTATCGACAGTACGGTTTATGGGATAGGTATACTGATTTGTATCCTGATGAAGATTTAATTTACACTGTTAATATCAGTGACTACAAAAAGGATTGGTACTTTGCTCAAGTTAATAGGAAGGCAAACAATACATATGTGGGAACTACATGGCAAATTAGGTTTCAACTTGATAACATTTCCTCCAATGGAAACTATTATTTGAGATTGGCACTTGCATCTGCTACTAGTTCTCTGTTACAGGTTAGGATCAATGATCGACAAAAACCACCATTATTTTCAACGGAAGTGATTGGGAAGGACAATACAATTGCTAGGCATGGGGTGCATGGATTATACTGGCTTTACAATGTGAGCATACCTGGAAGCAATTTTGTTGTAGGCAACAATACCATTTTTTTGACACAAGCTATGGGAGTTAGCCCTTGGACTGGGATCTTGTATGATTATATTCGTCTTGAAAGTCCCCCTCCCTCCATTCTTAATCCGAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_252487.p1 GENE.S_Transcript_252487~~S_Transcript_252487.p1 ORF type:complete len:689 (+),score=108.25,Rhamnogal_lyase|PF06045.7|7.4e-81,CBM-like|PF14683.2|8.9e-54,fn3_3|PF14686.2|5.1e+03,fn3_3|PF14686.2|1.4e+04,fn3_3|PF14686.2|2.1e-29,fn3_3|PF14686.2|1.6e+04 S_Transcript_252487:258-2324(+)
MMVMIMQGARFCLIILVLVNLISKHDAYTNRNVRVEKESYYYRSSSQEVQGQYQRVQLQYHDNYIVLDNGILQVTLQNPQGSVTNIRYNGITNLLEELNDETNRGYWDVVWKGEGVTRKKGNIDRLEGTDMKVMVETDEQVEISFTRSWNSSLSGKLPPLNIDKRFIMLRGSSGFYTYAIYERPKEFPGFTLANTRLAFKLNKLWFNYMAMADDRQRQLPLPEDRLPNRSQPLAYPEAVLLTNPIEPEFKGEVDDKYQYSGEAKDIQVHGWICSDPPTGLWQIIPNNEFRSAGPTKQYLTSHVGPTSLSVLLSTHYSGAELMATFEDGEPWKKVLGPLFVYANSVPKADDWHQLWDDAKQQLNVESKSWPYSFAVSDDFPSSDQRGSVSGSLLIHEKYLKAIKSASAAFIGLAAPGEVGSWQRESKGYQFWTRTDGEGHFIIKNVRPGSYDLYGWVPGFIGDYKYNGTLNIVAGHDVELGELVYEPPRDGPTLWEIGVPDRSAAEFFVPDPDPKLVNKLYLTHDKYRQYGLWDRYTDLYPDEDLIYTVNISDYKKDWYFAQVNRKANNTYVGTTWQIRFQLDNISSNGNYYLRLALASATSSLLQVRINDRQKPPLFSTEVIGKDNTIARHGVHGLYWLYNVSIPGSNFVVGNNTIFLTQAMGVSPWTGILYDYIRLESPPPSILNPN*

Click here to download the sequence:
Link to NCBI Protein BLAST