Transcript Information: S_Transcript_253111.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value3E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.97662389853873
Replicate 20.60723274011509
Replicate 31.5227947224991
Condition 2: 8 Hour
Replicate 10.97822891362995
Replicate 20.41049263559131
Replicate 30.97779117454043
Condition 3: 24 Hour
Replicate 10.40082355028613
Replicate 20.62377463054167
Replicate 30.92557961119692


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_253111.p1 GENE.S_Transcript_253111~~S_Transcript_253111.p1 ORF type:5prime_partial len:109 (+),score=15.68 S_Transcript_253111:3-329(+)
AATAAGGATACTCAACTTAAGTTGCTTCTTCTAATGCAACAATACTTGGATGATGAGAATGACTTTTTGGATATGATGGGTTGTGCAGCAAGTCACATGGCTTTGTATTATTTGAATCATATATATAAGGAACCTTGCATGACTTCTTATCTAACAGGAGAAAAATGGATGAATGAAATTTTGAATGGTCATGAAAAAAGGTGCTTTAACATGTTTAGAATGAATCAAGATACAATGCGTCAATTATGTATGGATTTGGAAGGCAAATATGGTTTAAAACCTTCAAATAGAATGTCCATATTAGAGAAAGTGGGTCTATTTGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_253111.p1 GENE.S_Transcript_253111~~S_Transcript_253111.p1 ORF type:5prime_partial len:109 (+),score=15.68 S_Transcript_253111:3-329(+)
NKDTQLKLLLLMQQYLDDENDFLDMMGCAASHMALYYLNHIYKEPCMTSYLTGEKWMNEILNGHEKRCFNMFRMNQDTMRQLCMDLEGKYGLKPSNRMSILEKVGLFV*

Click here to download the sequence:
Link to NCBI Protein BLAST