Transcript Information: S_Transcript_253409.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value3E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.43988431793687
Replicate 20.27350565567167
Replicate 30.11431447985703
Condition 2: 8 Hour
Replicate 10.48466796175302
Replicate 20.50845110544833
Replicate 30.79273813406955
Condition 3: 24 Hour
Replicate 10.45134056798748
Replicate 20.1873042279037
Replicate 30.83378659190466


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_253409.p1 GENE.S_Transcript_253409~~S_Transcript_253409.p1 ORF type:complete len:484 (+),score=69.88,SEO_N|PF14576.2|6.4e-71,SEO_C|PF14577.2|5.3e+02,SEO_C|PF14577.2|3.3e-05 S_Transcript_253409:207-1658(+)
ATGAGCCACCGCTGGAGTGAAAGCTTCTCCAGCCATTCATCGCCGTCTTTTGAACATGATTTTGTCATCAAGAGCATCCTTCTCAATCATGATCCTGATGGCCGTGATCCTGACTCGGTGATGCTGCTTCGAGTGATTGAGGCCATAATGTATCATGCGACTCCATCACAAGTTTCTGCTCAGCATCAGAGCTTCTTTGATATCAGCAGCATTGAAGATGTTGACGGATTAGCAGAGCCACTTGGAAACTCAATATATCCGATATTAACCAAGATACTCTCGGAGTGCTATGGAGAGAAAAATGTGTATGCAAGTACAATGTCTGTGTTGAATTTACTCGGAAACTACAGATGGGAAGCTAAAATGCTTTTAGCACTTTCAGCTTTTGCTATAGCATACGGTGAAATGTGGGTCATCACACAGTTGCAGAACCAGAATTCATTAGCTGCAGCAATCGCATTACTTAAAAGATTTCCCAGCAACTTCGAAACATTCAACCCTATCTTTACAGCACTGAATCAGTTTGTTAAAACTGCATTAGATGTGATCAGGTGTGTCAAGCAATTCGAATGTCTACCAGTCACTTATGCAGAACTGCCAGATGAAACTATCACCTGCACAAAATCATTAATATACTCTGCAGCTTACTGGGTTGTCAGAAGCATTATGGTTTGCATTTCTCTCATCAGAAATTTGAGAGCCATCAAAGATGAGCAAGATCCAAACTCAATATTAATCACAGTATGGGAGATCACAAGTTTGAAAAGCAAGATTAGCAGCATTGGGGCTCAGCTCAGGAAACAGGTAAATGTCTGTCAGCAACAATCAGAGCAAAGGATGCATAAGAAGCTCATAAATGTATTTCAGGAGAGATACTTTGACAACCAAGAAGTGCTTCGCTTCTTATTTGCTTTGAAGAGCGACTTGCCACTAAAGCAATCTTCACAGCAAGCAAAGCTTGCAATCTCCTCACTGAAAAACAAGGTCATCATAATGTTAATTTCAAGACCAGAGCTCCTGACCGTTGATGAATGGCTTTTTCTGGTTCATCAAACATATGATCACCCTCTGCATGATCAGCTAGATGGAGAATATGATATTCTGTGGATGCCAATCTCACCTTCTGAGAAATGGAGTAACAAGGAAGTAAAAATCTTTAATTTTTTGTCGAACTCCTTACCATGGTACTCAATTCAACAGCCATGGTCTCTCAGTTCAATAACTATCAAGTACGCAAAAGAGGAGTGGCAATTCAAAGAAAAACCAATTATGGTTGTCTTGGACTTCATTGGAAGGGTTACTAATGTAAATGCCTCTGACATGGTATCGATCTGGGGTGCGAAAGCATACCCCTTTTCAACAACAAGAGAAAAGGAGCTGTGGAAGGAAGAGAAATGGAATCTCCCACTCTTGTTTGGCACTATTGACCCCTTGTTGACTATGTGGGTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_253409.p1 GENE.S_Transcript_253409~~S_Transcript_253409.p1 ORF type:complete len:484 (+),score=69.88,SEO_N|PF14576.2|6.4e-71,SEO_C|PF14577.2|5.3e+02,SEO_C|PF14577.2|3.3e-05 S_Transcript_253409:207-1658(+)
MSHRWSESFSSHSSPSFEHDFVIKSILLNHDPDGRDPDSVMLLRVIEAIMYHATPSQVSAQHQSFFDISSIEDVDGLAEPLGNSIYPILTKILSECYGEKNVYASTMSVLNLLGNYRWEAKMLLALSAFAIAYGEMWVITQLQNQNSLAAAIALLKRFPSNFETFNPIFTALNQFVKTALDVIRCVKQFECLPVTYAELPDETITCTKSLIYSAAYWVVRSIMVCISLIRNLRAIKDEQDPNSILITVWEITSLKSKISSIGAQLRKQVNVCQQQSEQRMHKKLINVFQERYFDNQEVLRFLFALKSDLPLKQSSQQAKLAISSLKNKVIIMLISRPELLTVDEWLFLVHQTYDHPLHDQLDGEYDILWMPISPSEKWSNKEVKIFNFLSNSLPWYSIQQPWSLSSITIKYAKEEWQFKEKPIMVVLDFIGRVTNVNASDMVSIWGAKAYPFSTTREKELWKEEKWNLPLLFGTIDPLLTMWV*

Click here to download the sequence:
Link to NCBI Protein BLAST