Transcript Information: S_Transcript_253492.p1


Annotated TAIR IDAT1G51580.1
Annotated Gene NameRNA-binding KH domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19125612-19128102 | Forward length=621
E-Value2.1E-166
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.087917843787
Replicate 214.877979440475
Replicate 39.57549123849
Condition 2: 8 Hour
Replicate 17.3377687112716
Replicate 26.0826685241653
Replicate 36.4831610227132
Condition 3: 24 Hour
Replicate 115.33504109862
Replicate 218.346895085614
Replicate 316.892183349663


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_253492.p1 GENE.S_Transcript_253492~~S_Transcript_253492.p1 ORF type:complete len:651 (+),score=119.14,KH_1|PF00013.25|7.3e-13,KH_1|PF00013.25|5.4e-14,KH_1|PF00013.25|2.1e-13,KH_1|PF00013.25|8.9e-14,KH_1|PF00013.25|8.6e-06,KH_3|PF13014.2|6.6e-09,KH_3|PF13014.2|2.5e-10,KH_3|PF13014.2|1.1e-10,KH_3|PF13014.2|2e-06,KH_3|PF13014.2|3.5e+03,KH_3|PF13014.2|2.8,KH_2|PF07650.13|0.03,KH_2|PF07650.13|0.021,KH_2|PF07650.13|0.083,KH_2|PF07650.13|2.9,KH_4|PF13083.2|36,KH_4|PF13083.2|31,KH_4|PF13083.2|0.00028,KH_4|PF13083.2|13,KH_5|PF13184.2|1.6,KH_5|PF13184.2|2.4,KH_5|PF13184.2|0.0096,KH_5|PF13184.2|4.6e+02 S_Transcript_253492:319-2271(+)
ATGGAACCACCCTTCTCCTTCAAACGCCACCACCAGAACCACCACCACCCACCACCACCACCACCACAACTATCACAGCAACCAAGACCCTTACCTCCGGAAACCTTATTCAGAATCCTCTGCCCAGCCACCAAAGCCGGGGGCATAATCGGAAAAGGAGGCGCCGTAATCCGACAGCTCCGCGACGAAACCGGAGCACGTATTCGGATCATCGACGACTTCGTCCCCCCTCACTGCGAAGAGCGAGTCATTCTCATCGCCGCCCCGAGTTCCGACTCCGTAAACCCTAACTCCGGCGACGAGAATGGCGGTTTTTCTTCGGTGGCGCAAATGGCACTGGTTAGGGTTTTCGAGAGGATACTGAAGGTGGACGAGGAGAGGAGTGAGAGAAATGAAGAGAATGGGTTTAATGGAGGCGAAGTTAATGGCGGGATGGGCCAACACGTGGTTTGTAGGTTGTTGGCTCCTAGTCATCAAGTTGGGTGTGTTTTGGGAAGAGGTGGGAAAATTGTGGAGAAAATTAGGCAAGAGAGTGGTGCTAGGGTTAGGGTTTTGCCTAGAGAGGGTATTCCTTCTTGTGCTTCTCCTGGTGATGAACTCATTCAGATAACAGGAAACTTTCAAGCTGTAAAGAAAGCCCTCTTATCTGTTTCAACTTGTCTTCAGGAACACCCCAAAGCAGATATGTTTCATGGAGCTAACAATCCTGCTCACACAGATGCTTTCCCTCAAAGAGGAACACATGCTTCAGATTTTCACTCCAGGGGTTACCCAACAGGGTCAGCTCCTGAAAATTTTGGACCTAACAATGGGATGGTTGTTGAAGAGGATGTAATCTTCAGATTGCTATGTCAAGCAGATAAAATTGGTAGTTTGATAGGAAAAGGTGGTTCCATAATACGAGCTATTCAAACTGAAACTGGCGCGTCGATCAAGATTGGTGATGCTATTGCACCTGATTCAGATGAGCGAATTGTAGTGATTTCGGCACGAGAGAACTTAGACCTAAAACGCTCACCTGCTCAGGATGCCGTCATTCGTGTGCATAACAGAGTAGCAGAGGTTGGATTTGAACCAGGTGCTGCCATTGTTGCTCGGCTTGTTGTCCCTCCACAGCAAATAGGTTGTTTATTGGGTAAAGGAGGCCACATTATTGCTGAGATGAGACGACTTACTGGTGCTAGTATTCGAATTTTTGGCAGGGAACATGGTTCGAAGTTGAATACCCCAAATGATGAAGTTGTGCAGGTCATTGGGAGCGTGCAGTCGGTGCAGGATGCTTTGTTTCAGATTACCAGTAGGCTTAGGGAAATTGTATTTCCACCAAGGCCACACATTTCACATGTTAGTGGTCCCCCTTACATGAATACCTTTCCAGAGTTTCCGTCTCCATTTCGGCCTAGACATGATCAAGCTTCCCCAGGTCACTATCATTCGCCAGCAGGATTCTCTCATAGCTATGACAACCGTTCAGCTGGTCAGGGGCAAGCCCATCCTTCTAGCTTAACACAGGGTACAGATAGAACTGGTGTAGCAAATAGTGAAAACGAGCGCCATCATTATGCAGGTGATAGAGCTTCTTATGGTCAGTTTGAGCAGCCACCATCTCCTAGAGCATGGCAACGCCAGGCAGTTAACAACGCAAATTCTACAAGATTTCCTGACACAGGGCCTGGGCCTTCTGGGATGGTTGCAACCAGTAGTGAAAGTGGCCAAATGCAAATCATGACATCTGTGGAAGTGGTAGTTCCCCAAATACTGTTGCCCCACGTTTATGGAGAAAACAAAACTAATCTTGGTCATATTACTCAGTTCTCTGGAGCAGAGGTAGTTGTTCATGATCCAAAGCCTGGAGCGACTGAGGGTCTGGTTGTCATATCAGGAACTGCAAGTCAGTTGCATGCTGCTCAAAGCCTTCTTCAAGCCTTCGTTCTCTGTGGCCAAGCATTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_253492.p1 GENE.S_Transcript_253492~~S_Transcript_253492.p1 ORF type:complete len:651 (+),score=119.14,KH_1|PF00013.25|7.3e-13,KH_1|PF00013.25|5.4e-14,KH_1|PF00013.25|2.1e-13,KH_1|PF00013.25|8.9e-14,KH_1|PF00013.25|8.6e-06,KH_3|PF13014.2|6.6e-09,KH_3|PF13014.2|2.5e-10,KH_3|PF13014.2|1.1e-10,KH_3|PF13014.2|2e-06,KH_3|PF13014.2|3.5e+03,KH_3|PF13014.2|2.8,KH_2|PF07650.13|0.03,KH_2|PF07650.13|0.021,KH_2|PF07650.13|0.083,KH_2|PF07650.13|2.9,KH_4|PF13083.2|36,KH_4|PF13083.2|31,KH_4|PF13083.2|0.00028,KH_4|PF13083.2|13,KH_5|PF13184.2|1.6,KH_5|PF13184.2|2.4,KH_5|PF13184.2|0.0096,KH_5|PF13184.2|4.6e+02 S_Transcript_253492:319-2271(+)
MEPPFSFKRHHQNHHHPPPPPPQLSQQPRPLPPETLFRILCPATKAGGIIGKGGAVIRQLRDETGARIRIIDDFVPPHCEERVILIAAPSSDSVNPNSGDENGGFSSVAQMALVRVFERILKVDEERSERNEENGFNGGEVNGGMGQHVVCRLLAPSHQVGCVLGRGGKIVEKIRQESGARVRVLPREGIPSCASPGDELIQITGNFQAVKKALLSVSTCLQEHPKADMFHGANNPAHTDAFPQRGTHASDFHSRGYPTGSAPENFGPNNGMVVEEDVIFRLLCQADKIGSLIGKGGSIIRAIQTETGASIKIGDAIAPDSDERIVVISARENLDLKRSPAQDAVIRVHNRVAEVGFEPGAAIVARLVVPPQQIGCLLGKGGHIIAEMRRLTGASIRIFGREHGSKLNTPNDEVVQVIGSVQSVQDALFQITSRLREIVFPPRPHISHVSGPPYMNTFPEFPSPFRPRHDQASPGHYHSPAGFSHSYDNRSAGQGQAHPSSLTQGTDRTGVANSENERHHYAGDRASYGQFEQPPSPRAWQRQAVNNANSTRFPDTGPGPSGMVATSSESGQMQIMTSVEVVVPQILLPHVYGENKTNLGHITQFSGAEVVVHDPKPGATEGLVVISGTASQLHAAQSLLQAFVLCGQAF*

Click here to download the sequence:
Link to NCBI Protein BLAST