Transcript Information: S_Transcript_253525.p1


Annotated TAIR IDAT4G14050.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:8103645-8105483 | Reverse length=612
E-Value3.5E-279
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47912113516692
Replicate 20.43331174253712
Replicate 30.5131366831771
Condition 2: 8 Hour
Replicate 11.1517804917601
Replicate 21.5378357493756
Replicate 30.83728370297799
Condition 3: 24 Hour
Replicate 10.35752673470694
Replicate 20.1483719252134
Replicate 30.53663924266204


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_253525.p1 GENE.S_Transcript_253525~~S_Transcript_253525.p1 ORF type:complete len:611 (+),score=118.95,PPR|PF01535.16|0.0014,PPR|PF01535.16|7.6e+02,PPR|PF01535.16|5.8,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.076,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|0.18,PPR|PF01535.16|0.007,PPR|PF01535.16|4.1e+02,PPR|PF01535.16|4.7e+02,PPR|PF01535.16|7.5e+03,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|0.00027,PPR_2|PF13041.2|0.57,PPR_2|PF13041.2|3.4e-11,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|2.9e+02,PPR_2|PF13041.2|7.1e+03,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|1.8e+02,DYW_deaminase|PF14432.2|1.1e-33,PPR_1|PF12854.3|0.081,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|0.064,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|26,PPR_3|PF13812.2|55,PPR_3|PF13812.2|0.08,PPR_3|PF13812.2|19,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|58,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|7.8e+03 S_Transcript_253525:159-1991(+)
ATGCTTTACTCTCATTATATCCACCAACTAGGAGCTTGTGCCAAAACCCATTCAATCTTTCTTGGCCAAAAACTCCATGCCCAGATTATTAAACTTGGCCTTCATCAATATGGGCCTCTACCAAATTCCCTTCTTGAAATGTATGGAAAATGTGGGGTTATTAAGAATGCACTCCAACTGTTTGATGAAATGCCCAAGAGAGATTTTGTCTCTTGGGCTTCGATTCTTACTGCCCACAACCTTGCTGATCTTCCTCACAGAACATTGTGTATGTTTCCCAGAATGTGGGAGGTAGATAGGTTAAGGACTGACCACTTTGTCATTGCTAGCCTTGTTAAAGCTTGTGCTAGTTTGGGTGATGTTAGGTTAGGTAAACAAGTGCATGGTCATTTTGTTAGGTCACCCTTTCTTGATGATGATGTTGTTAAGTCATCACTTGTTGGTCTGTATTCCAAATGTGGATTTCCTGGTTATGCCAGGATGGTTTTTGATTCAATTCGGGTGAGGAATACTATTTCTTGGACAGCTTTGGTTTCTGGTTATGCTAAAAGTGGGTGGAGAGTGGATGCTTTGGAGCTTTTCTCGAGAATGCCTGTCAAGAATTTGTTGTCTTGGAGTGCTCTGATATCTGGGTTTGTGCAAAGTGGTCATGGAGTTGATGCATTTCATGTTTTTATGAAAATGAGAAGAGAGGCTGATCATGAGGCTGACCCATTTATACTTTCGAGCATTATTGCATCATCTGCTAATATGGCGATGCTACAGCTGGGGAAGCAAGTTCATTGCTTGGTTATAGTCCTTGGTTTTGAGCGTAACTTATTCATTTGCAATGCGCTGGTTGATATGTATGCCAAATGCAGTGAACTGTTGGCTGCAAGAAGTATTTTTCACGGCATGCTACAAAGAGATGTTGTGTCATGGACTTCAATTATAGTTGGCACGGCCCAACATGGCCAAGCAAAGGAAGCATTGTCACTGTATGATGAGATGGTGTTGGAAGGTGTCAAACCAAATCAAGTGACGTTTCTTGGTTTGATTTATGCTTGTAGCCATGTGGGTTTAGTTAGCAAAGGTCGTCATTTGTTTCGTTCGATGGTTGAGGATTATGGAATTTGGCCATCTCTACAGCATTATACATGCCTATTGGATCTTCTTAGCAGATCTGGTCACCTTGTCGAGGCTGAGGAAGTCCTGAAGACGATGCCATCTGAACCTGATGAAGCTGCTTGGGCTGCTTTGCTAAGTGCTTGCAGGCAACACAAGAATACAGAAGTGGCAATTCGGGTTGCTGATCATTTACTGCCCCTGGGACCGAAAGATCCTGCCACTTTTATTTTGCTTTCCAATACATATGCTTCTGCTTCCATGTGGGAAGGTGTATCTAAAGTGCGGAAGCTGATGTCCGAAATGGACTTTAAGAAAGAGCCTGGCTATAGCTGTATCGAACTTACAAAGGAGAGTCAGGTTTTCTATGCAGGGGAGATATTTCATCCTATGAAGGACCAGCTTCTTGTTTTGCTCAAGAAATTGGATGAAGAGATGAGGAAAAAAGGTTATGTTCCAGATACTAGCTATGTTTTACATGAATTGGAGCAAGATGAGAAGGAGAGGCACTTGTTGTGGCACAGCGAACGGTGGGCTGTGGCGTATGGGCTGCTTAAATCTGTTCCTGACACTACCATACGCATAGTGAAGAATTTGCGTATTTGTGGGGATTGTCATACATTTCTAAAACTCATTAGCAGCATTACTAGGAGAGAGATCATTGTTCGAGATATCAGCAGGTTTCATCATTTCAATGATGGCAAATGTTCTTGTGGAGATTTTTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_253525.p1 GENE.S_Transcript_253525~~S_Transcript_253525.p1 ORF type:complete len:611 (+),score=118.95,PPR|PF01535.16|0.0014,PPR|PF01535.16|7.6e+02,PPR|PF01535.16|5.8,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.076,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|0.18,PPR|PF01535.16|0.007,PPR|PF01535.16|4.1e+02,PPR|PF01535.16|4.7e+02,PPR|PF01535.16|7.5e+03,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|0.00027,PPR_2|PF13041.2|0.57,PPR_2|PF13041.2|3.4e-11,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|0.3,PPR_2|PF13041.2|2.9e+02,PPR_2|PF13041.2|7.1e+03,PPR_2|PF13041.2|1.1e+04,PPR_2|PF13041.2|1.8e+02,DYW_deaminase|PF14432.2|1.1e-33,PPR_1|PF12854.3|0.081,PPR_1|PF12854.3|0.002,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|0.064,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|26,PPR_3|PF13812.2|55,PPR_3|PF13812.2|0.08,PPR_3|PF13812.2|19,PPR_3|PF13812.2|0.03,PPR_3|PF13812.2|58,PPR_3|PF13812.2|3.7e+03,PPR_3|PF13812.2|7.8e+03 S_Transcript_253525:159-1991(+)
MLYSHYIHQLGACAKTHSIFLGQKLHAQIIKLGLHQYGPLPNSLLEMYGKCGVIKNALQLFDEMPKRDFVSWASILTAHNLADLPHRTLCMFPRMWEVDRLRTDHFVIASLVKACASLGDVRLGKQVHGHFVRSPFLDDDVVKSSLVGLYSKCGFPGYARMVFDSIRVRNTISWTALVSGYAKSGWRVDALELFSRMPVKNLLSWSALISGFVQSGHGVDAFHVFMKMRREADHEADPFILSSIIASSANMAMLQLGKQVHCLVIVLGFERNLFICNALVDMYAKCSELLAARSIFHGMLQRDVVSWTSIIVGTAQHGQAKEALSLYDEMVLEGVKPNQVTFLGLIYACSHVGLVSKGRHLFRSMVEDYGIWPSLQHYTCLLDLLSRSGHLVEAEEVLKTMPSEPDEAAWAALLSACRQHKNTEVAIRVADHLLPLGPKDPATFILLSNTYASASMWEGVSKVRKLMSEMDFKKEPGYSCIELTKESQVFYAGEIFHPMKDQLLVLLKKLDEEMRKKGYVPDTSYVLHELEQDEKERHLLWHSERWAVAYGLLKSVPDTTIRIVKNLRICGDCHTFLKLISSITRREIIVRDISRFHHFNDGKCSCGDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST