Transcript Information: S_Transcript_25386.p1


Annotated TAIR IDAT5G20600.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6966345-6967943 | Reverse length=532
E-Value4.7E-130
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.7997333068174
Replicate 27.4073625590212
Replicate 38.2892441964197
Condition 2: 8 Hour
Replicate 18.3145926146222
Replicate 27.7938028654643
Replicate 38.6956345825375
Condition 3: 24 Hour
Replicate 17.5707899461987
Replicate 27.5273309206641
Replicate 35.9185302755688


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_25386.p1 GENE.S_Transcript_25386~~S_Transcript_25386.p1 ORF type:complete len:554 (+),score=150.27,Nop52|PF05997.8|5.5e-54 S_Transcript_25386:270-1931(+)
ATGGAAACAACAACAACAACAACAGAAGACCCTACACCCACAACAGGCTCCAATAAACTCATAAGGGGTTTAGCCTCATGCAATTCCACCCTCAGATCCAAATCCCTAAAAGCCCTTCTCACTTGGCTCCCTTCCCAAGCCCTAATTCCTGATGACGACCTCAAAAAGCTTTGGAAATCCCTCTTTTACTGTATGTGGCATTCTGACAAGATCCAAAACCAAACCCATCTCATCAATCTACTTTCCTCCCTTCTTCCCAATCTAAACCCTAATCTTTCTCTCTCTTACTTCTCCAATTTTCTCATTACTATGCGCAGGGAATGGCCCGGTATTGACCATCTCAGGTTAGACAAGTTTTATCTTTTAATCCGTTCTTTTGTGAGGAATTTGTTTGTTTTGCTCAAGAATAAGAATTGGGATTTGGGGGTTTTGGAGAGTTTTGTTGGGGTTTTGGAAAACAGGGCTTTTTTGGTTTGTGATGATGTTAATGACAATGGGTTGGGTAATGGTGTCACTTATCATATTGTTTCTGTTTTTTGTGATGAGATTAAACCCTTTTTGCCCTTGAGTTTTGATGTCTTGAATTTGTTGTTTAGGCCCTTTTTTGGGGTTTTGGGTAAGAGTGAGAATAGGGTTTTGGTGGGTAAGGTTAAAAGTTGTGTTTTTGATTGTTTGCTTAAGAACGGCAACGCTTTGTTGAGTGCTAGGAAGGATAATGGTAGTAATAATGAGAAGGAGGTTGATGAGAAGAGGGAGGTTGTTTTGTTCGGGACTATAGCTTTGGCTATGGGATTTTCGACGAGGTTTTATGAGTTAGGTTCGGGTTCGGATTGTGTTCAAGGGAATAGGAAGGTTTTGTTTGGTTTACATGAGGAGTTTTCGAGGTTGGAGAAGGAGAAGGGTTCGCTTGGGATTGAGGTTTCGCTTCCTGAGGGTAGTAATGTTGTTGGCCAGGATGACAGGGAGGTGTCCCAATTGATCCCTGTTAATGGTGAGTCTAAAGCTTCGAAAGATAAGAAGAAGTCTAAGAAGAAGAAAAAGAAGAAGAATGAAGTTGCTGTTGAAGATGGGTCAAGTGGGAGCGGTAGTAATGGGGATATAGAAATGGTTAGTTCAAATGATGGTGATTCGAATGCTGAACCAGAAGATGGAGAGGATGCCCTTGAACTTGACGATAACACGATGTCTAACCTTCAAAAGCAGTTCGAGAAGATTGCTGCCGAGTCTGGTTTGGATGGTGATGGTGAGAGTGCACTTGAAACTCCTCCCACAGTGGTTCAAGTCAATGGTAAGGCAAAGAAGCGCAAGAGATCAAAGTCAGTGGTTGGTGCTGAAACAGCTGAGAAAGAAGTTGCGGAAGAAGAAGGTGCCCCCAAGACAGAGGAAAAAAGTGGCAAGAAAGTTAGGTTTTCAATGAAGAATAATCTCATTTGGAAGCCACATAGTCCCTTGCCTCCACAGAGTTTGAGAATACCTCCATCTGTTACCCCTAGGGGCAGCGCTCTTAAGCCTGTTGTATCTCCTGGACCTATCAGAGACATATCAAAAGACGCCAAGAAAGCAAAGAAGAAGAAAGCAAGTCCTATGAAGAAAGCTAGAAAAGTGAAGACCATATCTCCTGCAGTTAAACGTGTGAAGAAGGTTAAGCAGATGTCTGCGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_25386.p1 GENE.S_Transcript_25386~~S_Transcript_25386.p1 ORF type:complete len:554 (+),score=150.27,Nop52|PF05997.8|5.5e-54 S_Transcript_25386:270-1931(+)
METTTTTTEDPTPTTGSNKLIRGLASCNSTLRSKSLKALLTWLPSQALIPDDDLKKLWKSLFYCMWHSDKIQNQTHLINLLSSLLPNLNPNLSLSYFSNFLITMRREWPGIDHLRLDKFYLLIRSFVRNLFVLLKNKNWDLGVLESFVGVLENRAFLVCDDVNDNGLGNGVTYHIVSVFCDEIKPFLPLSFDVLNLLFRPFFGVLGKSENRVLVGKVKSCVFDCLLKNGNALLSARKDNGSNNEKEVDEKREVVLFGTIALAMGFSTRFYELGSGSDCVQGNRKVLFGLHEEFSRLEKEKGSLGIEVSLPEGSNVVGQDDREVSQLIPVNGESKASKDKKKSKKKKKKKNEVAVEDGSSGSGSNGDIEMVSSNDGDSNAEPEDGEDALELDDNTMSNLQKQFEKIAAESGLDGDGESALETPPTVVQVNGKAKKRKRSKSVVGAETAEKEVAEEEGAPKTEEKSGKKVRFSMKNNLIWKPHSPLPPQSLRIPPSVTPRGSALKPVVSPGPIRDISKDAKKAKKKKASPMKKARKVKTISPAVKRVKKVKQMSA*

Click here to download the sequence:
Link to NCBI Protein BLAST