Transcript Information: S_Transcript_254004.p1


Annotated TAIR IDAT5G28640.1
Annotated Gene NameSSXT family protein
Annotated Gene Symbol(s)AN3, GIF, GIF1, ATGIF1
Annotation TypeOrtholog
Chromosome Positionchr5:10647831-10649620 | Reverse length=210
E-Value7.1E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.301411483433
Replicate 27.555749848464
Replicate 36.3160055080824
Condition 2: 8 Hour
Replicate 118.40410397232
Replicate 213.94409743983
Replicate 314.453896663652
Condition 3: 24 Hour
Replicate 13.7405622415401
Replicate 26.2092634455746
Replicate 33.4550745760433


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_254004.p1 GENE.S_Transcript_254004~~S_Transcript_254004.p1 ORF type:complete len:146 (+),score=41.30,SSXT|PF05030.8|1.7e-23,SSXT|PF05030.8|7.7e+03 S_Transcript_254004:407-844(+)
ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTACTCCAACAACGTCACTACTGATCATATTCAACAGTACTTGGATGAGAACAAGTCACTGATTCTGAAGATTGTGGAAAGCCAAAATTCAGGGAAGCTCAATGAGTGTGCAGAGAACCAAGCTAGGCTGCAGAGAAATCTGATGTACCTGGCTGCCATTGCTGATTCTCAACCACAACCAGCTACCATGCATTCTCAGTTTTCACCAAGTGGCATGATACAGCCTGGTGCACAATACATGCAACAGCAACAGCAACAGCAGCAGCAAGCTCAATCGATGACGCCTCAAGCTCTCAATGGCTGCACGCTCATCCATGCTATACAGCCAACAGGCATATTCAGCTCTTCAACAGAACCAGGCCTTACACAGCCAAATCGGCATGAGCTCTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_254004.p1 GENE.S_Transcript_254004~~S_Transcript_254004.p1 ORF type:complete len:146 (+),score=41.30,SSXT|PF05030.8|1.7e-23,SSXT|PF05030.8|7.7e+03 S_Transcript_254004:407-844(+)
MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQPATMHSQFSPSGMIQPGAQYMQQQQQQQQQAQSMTPQALNGCTLIHAIQPTGIFSSSTEPGLTQPNRHELW*

Click here to download the sequence:
Link to NCBI Protein BLAST