Transcript Information: S_Transcript_254103.p1


Annotated TAIR IDAT3G25680.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9349693-9352258 | Forward length=558
E-Value5.4E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.959751415829
Replicate 211.893783947129
Replicate 312.104922869204
Condition 2: 8 Hour
Replicate 117.504880651197
Replicate 217.452956837832
Replicate 316.941585718617
Condition 3: 24 Hour
Replicate 112.701341052349
Replicate 212.845287342946
Replicate 313.186117677593


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_254103.p1 GENE.S_Transcript_254103~~S_Transcript_254103.p1 ORF type:5prime_partial len:614 (-),score=163.02 S_Transcript_254103:220-2061(-)
CCACCACCACCACCTGAATCGCCTTCTTCCTTCCATTTCTCTCTCCTAAACCACCGTAACCCTAAAACCCTAAACCCCCAAATGTGTACTTCATCATCATCTTCTTCATACTCTTCCTCTTTCTTTCTCCTCACCAATCGCCTCCCTCTCTCTCTTCATCGCCATCCCCCTCACCATCACACCTTCCTCACCAATTCCCCTTTCTATCTCCTATCCCGTCATTCTCTGAAACTCTCCTCTCTGAATTCTTCTTCTTCCACCTCCATTTCCAACAACAACACCCTCGATCATCTCTCCTGGTCTTCTCTCAACGATGACGATGATCCCAATACCAGCAATTTCGCCGGTTGGGATTCTTCATCTCCCCTAACCCCCTCCCCCATTAAACAATCAGGTTTTCCGAAGTTGCTGGTCGCTGGTATTGCCACGTCAGCCGCTCTTCTGGTCGCTGTGATTTCTTACTTCTCACTCTGTAAAAACGGGTTCAGAGAGTCGATTAGAAGCTCAATTTCGGGTTCGTCGAACCAGCAAGTGACAGAAACTGAAGCACCTGCTGAATCTGATAAACATCAAACTAAGGAGGAGGGAAATGGAAATGGAATTGAAGGTGATGTGAGTGTCGACATCGAATTGAGTGATCCAGTTACTGAGACTCCTACTGCTTCTGAGAAGAATGTGCCTCGTGTTGTCACTGCTACAGTGGATTCCAATCAACAAGAAGCTGTGAATGTGCTGAAGAAAATGAAGATTATAGAGGAAGATGTTAAGGCTGGTGAGCTCTGTAGCCGGAGAGAATATGCAAGGTGGTTAGTTCGAGCAAGTTCGTTGTTGGAAAGGAACCCAAAACATAGGTTAACTCCTGCAGTTGCCCTCTCTGGATATTTCATCCCTGCATATGAGGATGTGACTACTGGAGACCAAGATTTTGACTCCATTCAAGCATTGGCAGAATCTGGTGTTGTGTTGAGTAAACTATCACAAAAGTACTATTTACATGAAGGAGGCACAGATTTTTCTCCTGAAAGATTTATATCGCGGCGTGATCTCATAGATTGGAGAGCTCAGCTGGAGTATGATTTTTCCATGACAGGAAATCAAGAGATACTGAAAACAAAATTGGACCTTTTGGATGTGAGGGAGATAAGCTCAGATAATTGGCCAGGACTTCTCATGGACATGTTTGCTGGAGACAAAAGCCTTCTTAGAAGAGTTTTCGGACAAATTAGGCGTCTTCAACCAAATAAACCCTCAACTGTAGCAGAAGCAGCCGTGGCACTAGGAAGTGGACGGATGACAGAGGCAATCAATAATGAATTATTAAGAATACAATCTGAAGAATCTTGCAGGCAAGATGCTAAAGAAGAAATAAAACGTGAGCTGCTTGATCGAGGGGAGATACAGAAGTATTGGGCTGAAAAGATTGAAGTGGAGAGAGCCCATGGTTTAGAGGTGGAGCAATATTACATAGAAGTCATCAATGAATTGGAACAGGAGAAGGCTGTTCAGGAAGGTGTTTTCAATGGGTTTTCAAAGGAGAAAGCAGCTATGGACTGTCAAAAGCAACTTCTAAATGGTTTGAAGGAGGATGTGAGTGAAATGTCTGAGAAGGTCGCATCAGAGAGGGGTCAACAAATTGCTGAGGAGGAAGCTGCACAAACTCTTCGCTTTGATTTGCAAGTGGAGAAGGAAGGTATACTTGATGCTAAATCATTGCTCGAGGCTGAGATTGAAGCTCTTCGAATTTTGAGATCGTGGATTGAGGATGAAGCAAGGAAAAGCCAAGCTCGTTGGAGGGTTCTTGAAGAGGTAAGGCGACGATGGAAATGGGATAGTCTTGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_254103.p1 GENE.S_Transcript_254103~~S_Transcript_254103.p1 ORF type:5prime_partial len:614 (-),score=163.02 S_Transcript_254103:220-2061(-)
PPPPPESPSSFHFSLLNHRNPKTLNPQMCTSSSSSSYSSSFFLLTNRLPLSLHRHPPHHHTFLTNSPFYLLSRHSLKLSSLNSSSSTSISNNNTLDHLSWSSLNDDDDPNTSNFAGWDSSSPLTPSPIKQSGFPKLLVAGIATSAALLVAVISYFSLCKNGFRESIRSSISGSSNQQVTETEAPAESDKHQTKEEGNGNGIEGDVSVDIELSDPVTETPTASEKNVPRVVTATVDSNQQEAVNVLKKMKIIEEDVKAGELCSRREYARWLVRASSLLERNPKHRLTPAVALSGYFIPAYEDVTTGDQDFDSIQALAESGVVLSKLSQKYYLHEGGTDFSPERFISRRDLIDWRAQLEYDFSMTGNQEILKTKLDLLDVREISSDNWPGLLMDMFAGDKSLLRRVFGQIRRLQPNKPSTVAEAAVALGSGRMTEAINNELLRIQSEESCRQDAKEEIKRELLDRGEIQKYWAEKIEVERAHGLEVEQYYIEVINELEQEKAVQEGVFNGFSKEKAAMDCQKQLLNGLKEDVSEMSEKVASERGQQIAEEEAAQTLRFDLQVEKEGILDAKSLLEAEIEALRILRSWIEDEARKSQARWRVLEEVRRRWKWDSLE*

Click here to download the sequence:
Link to NCBI Protein BLAST