Transcript Information: S_Transcript_254157.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value3.3E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.53945272774014
Replicate 20.59629160966256
Replicate 30.62306540822975
Condition 2: 8 Hour
Replicate 10.86454285069458
Replicate 21.2092891156609
Replicate 30
Condition 3: 24 Hour
Replicate 10.44280169237691
Replicate 21.2250708960188
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_254157.p1 GENE.S_Transcript_254157~~S_Transcript_254157.p1 ORF type:5prime_partial len:148 (+),score=28.94,CBM-like|PF14683.2|5.1e-44 S_Transcript_254157:3-446(+)
GATTTATATCCTAATGAAGATCTTGTTTATACAATTGGTGTCAGTGATTACAGAAAGGACTGGTTCTTTGCTCAAGTTACCAGGAGAAAAGGCAATACATACCAAGGCACTACTTGGCAGATCAAGTTCAAACTTGACAACGTGAATGAAAATGGTGTCTATAAATTGCGATTGGCACTTGCAGCAGCAAATTCGGCTGAATTACAGGTTCGAGTAAATGATCCAAGTGAAGATCCTCCAATATTCACAACAGGAGAAATGGGGAAAGGTAATGTGATTGCAAGACATGGGATTCATGGGGTCTACTTGCTTTATACTGCGGACATAAAAGGCACTGAGCTCGTTGTTGGTGATAACACCATCTTCTTAACTCAGCCAAATGGTGGCAGCCCTTTTGTTGGGATCATGTACGATTACATTCGCCTTGAAGGACCTCCTCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_254157.p1 GENE.S_Transcript_254157~~S_Transcript_254157.p1 ORF type:5prime_partial len:148 (+),score=28.94,CBM-like|PF14683.2|5.1e-44 S_Transcript_254157:3-446(+)
DLYPNEDLVYTIGVSDYRKDWFFAQVTRRKGNTYQGTTWQIKFKLDNVNENGVYKLRLALAAANSAELQVRVNDPSEDPPIFTTGEMGKGNVIARHGIHGVYLLYTADIKGTELVVGDNTIFLTQPNGGSPFVGIMYDYIRLEGPPQ*

Click here to download the sequence:
Link to NCBI Protein BLAST