Transcript Information: S_Transcript_254430.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value3.9E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5217090922276
Replicate 21.4017020049247
Replicate 31.1248428615157
Condition 2: 8 Hour
Replicate 11.6529209775669
Replicate 21.3076302889802
Replicate 31.4084168684359
Condition 3: 24 Hour
Replicate 11.4433722255539
Replicate 21.8142568352095
Replicate 32.0510938270997


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_254430.p1 GENE.S_Transcript_254430~~S_Transcript_254430.p1 ORF type:internal len:787 (-),score=151.13,UBN2|PF14223.2|1.1e-34,rve|PF00665.22|2.8e-25,UBN2_2|PF14227.2|6.7e-14,UBN2_2|PF14227.2|6.8e+03,gag_pre-integrs|PF13976.2|3.4e-10 S_Transcript_254430:3-2360(-)
AAGGATGCAAAGGCTCTTTTGTTCATTCAATCAGCATTGGATGATGAAATGTTTCCCAGAATTGCAGCTTCCGCAACCGCAAAGGAGGCATGGGATGTTCTCAAGCAAGAGTATCTGGGTGATAAGAAGGTAATTACAGTTAAACTCCAATCTCTACGTCGTGATTTTGAAAATTTGAGCATGGGTGAGAAGGAACCTGTGCAAACTTTTCTTTCTAGAGTGTCTGGCATTGTTAATCAAAGAAGGAGTTATGGTGAAATTGTAAATGATGAAACTGTTGTGGGTAAGGTCTTGAGAAGTCTAAACAAGGATTTTAGGCATATAGTTGCTGTCATTGAGGTAACTCAAGACTTAGAGACCTATACATTTGATGAATTGATGAGTTGTTTGATTGCTTGTGAGGAGAGGTTGAATAGGTCTGATGAAAAATTCGAAGAGAAGGCATTGCAAGTGAAGAGTGAGTCTTCTTTTAAGGGGAAGACAGAGAGCTACCGAGGCAGAGGTAGAGGTGGTTATCGTGGCCGAGGCCGTGGTAGAGCAAGTCGTGGAGGAGGCAGAGGACATAGTCAATTTGCAGGAGAGTGTCGTTATTGCAAAAAGTATGGGCATAAGGAAGCAGATTGTTGGTCCAAGCAGAGGGAGCAGGGAAATCAGAATCATGCAAACTATGCTAAGAAAGTAGAGGAAGATAATAGGCTTTTTATGGCACATTCTTATGTGGGTAGTGTTGCTGCTAATGTGTGGTTTCTGGATAGTGGGTGCTCGAACCATATGTGTGGTGTGAAGTCTCTATTTACTAATCTTGATGAGTCCCAGCAAAGTGATGTTCGTCTTGGAGATGATAACAAGATTAAGGTTGCCGGCAAGGACACAGTTTCAATCAAAACCATTGATGGTAACTCTAAGCTTATATATAATGTGCAATATGTTCCTAGCTTAGCCCATAACTTGTTGAGTGTAGGACAACTCATGACGTCTGGTTATTCTGTTATATTTGATGATAATTGTTGTGTCATAAAACACAAGAAAACTGAACAAACCATAGCTAATGCTCACATGACCCAAAACAATATGCTTCCTCTTGAAGTTTCAAATGTGGTGAACAGTGCATTAGTTGTTAAAGGGTCTAGCGAAGCAAAATTGTGGCATTTGCGTTATGGTCATTTGAATGAGAAAGGTCTGAAACTGTTGAATCAGAAAAATATGGTGCTTAGACTGCCTTGTATTGGTGCACTTGAATTCTATGAAGGGTGTGTTTATGGGAAACATAGTAGAAATTCATTTCCTGTAAATAAGTCTTGGAGGGAGTCTGATTGTCTTGGGTTGGTTCATGTTGATGTTTGTTGGCCAATGAGTGTTGAGTCATGTGGTGGTAGGAAGTATTTTCTGCTGTTTACGGATGATCATAGTCGGATGAGTTGGGTGTATTTTTTGAAGAGAAAATCTGAATCGTTTGATTGTTTCAAGAAGTTCAAGGCTCTTGTTGAAAATCAGAGTGGGTATCGTATCAAGGTTCTTCGTTCTGATAGAGGTGGTGAGTTTATCTCTAATGAATTTAATCTTTTTTGTGATGAGCATGGTATTCGTAGGGAACTCACAGCCCCGTACACACCACAACAAAATGGAGTGGCAGAGTGGAAGAACAGAACGGTCGTTAAGATGGCCAGGAGCATGCTAGCTGCAAAGCGGCTTCCAAAACTGTTCTGGGCAGAAGCTGTAGCTACCGCAGTCTATTTGCTGAATCTTTCGCCCACAAGAGCTGTTAGGAATCAAACTCCATACCAAGCTTGGCATAACCACAGGCCAGGGGTAAGCCATCTGAGGGTGTTTGGTTGTGTAGCTTATGCCTTAGACAAATCTCGGAGTTGCACGAAACTTGACAATAAATCTGAAAACTGCATCTTTGTTGGCTATAGCACTCAATCTAAGGCATATAAGCTATATAACCCTGTTACCCAGAAGATTCTTATCAGCCGAGATGTGAAGTTCAACGAGGAAGAATCTTGGGCGTGGCGTGATGATAATGTAGAAGCAGCAGGACCATTTGAAGCACCTCTGACAGAGAATTCAGGTGCAGACTTCACCCAACCAGCATGCCAATCACCTACAAACACAAGCCCAAACATAACTTCAAATCAAAGTCCCAAAACCACTCCAAACTCCAAAACCTCTCCACAAAGTCCAGAAAATCAAACTAGCTCCACATATGATCACACTCCAAAGAAATTTCGATCTTTGTCCGAAATTTACAAAAACTGCAACTTCGCGCTTTACTCCTCTGATCCCATTTATTATGATGAAGCTGCTGAAAGTAAGGCTTGGTGTGAGGCCATGGATGTAGAGATGTCAGCCATAGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_254430.p1 GENE.S_Transcript_254430~~S_Transcript_254430.p1 ORF type:internal len:787 (-),score=151.13,UBN2|PF14223.2|1.1e-34,rve|PF00665.22|2.8e-25,UBN2_2|PF14227.2|6.7e-14,UBN2_2|PF14227.2|6.8e+03,gag_pre-integrs|PF13976.2|3.4e-10 S_Transcript_254430:3-2360(-)
KDAKALLFIQSALDDEMFPRIAASATAKEAWDVLKQEYLGDKKVITVKLQSLRRDFENLSMGEKEPVQTFLSRVSGIVNQRRSYGEIVNDETVVGKVLRSLNKDFRHIVAVIEVTQDLETYTFDELMSCLIACEERLNRSDEKFEEKALQVKSESSFKGKTESYRGRGRGGYRGRGRGRASRGGGRGHSQFAGECRYCKKYGHKEADCWSKQREQGNQNHANYAKKVEEDNRLFMAHSYVGSVAANVWFLDSGCSNHMCGVKSLFTNLDESQQSDVRLGDDNKIKVAGKDTVSIKTIDGNSKLIYNVQYVPSLAHNLLSVGQLMTSGYSVIFDDNCCVIKHKKTEQTIANAHMTQNNMLPLEVSNVVNSALVVKGSSEAKLWHLRYGHLNEKGLKLLNQKNMVLRLPCIGALEFYEGCVYGKHSRNSFPVNKSWRESDCLGLVHVDVCWPMSVESCGGRKYFLLFTDDHSRMSWVYFLKRKSESFDCFKKFKALVENQSGYRIKVLRSDRGGEFISNEFNLFCDEHGIRRELTAPYTPQQNGVAEWKNRTVVKMARSMLAAKRLPKLFWAEAVATAVYLLNLSPTRAVRNQTPYQAWHNHRPGVSHLRVFGCVAYALDKSRSCTKLDNKSENCIFVGYSTQSKAYKLYNPVTQKILISRDVKFNEEESWAWRDDNVEAAGPFEAPLTENSGADFTQPACQSPTNTSPNITSNQSPKTTPNSKTSPQSPENQTSSTYDHTPKKFRSLSEIYKNCNFALYSSDPIYYDEAAESKAWCEAMDVEMSAIE

Click here to download the sequence:
Link to NCBI Protein BLAST