Transcript Information: S_Transcript_25587.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2672857731038
Replicate 20.79701374427804
Replicate 31.1507782777944
Condition 2: 8 Hour
Replicate 12.0660066152887
Replicate 21.7632984149538
Replicate 31.9950793324859
Condition 3: 24 Hour
Replicate 11.8652445673414
Replicate 21.1908735146849
Replicate 31.6566203221751


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_25587.p1 GENE.S_Transcript_25587~~S_Transcript_25587.p1 ORF type:complete len:609 (+),score=102.45,UBN2_2|PF14227.2|4.2e-38,rve|PF00665.22|3.5e-23,UBN2|PF14223.2|2.6e-17,gag_pre-integrs|PF13976.2|7.2e-14 S_Transcript_25587:670-2496(+)
ATGACTTCAATCGCGAAATTCGAGGTTGAAAAATTTGACGGCAAGATTTCATTCAACACATGGAAAGTTCAGATGAGAGCAATTCTAGTCCAAAACGGATTGAAAAAAGCATTGGATGGCAAAGCGAAGAAACCCGCCACCATGACGGATGAACAATGGGAGGAGCTTGATGAGAAAGCACTTTTCGCCATACAGCTATGTCTATCCAAGGAAGTCCTACGCGAGGTTCTTCATGAAACCACTGTAGCCGGATTGTGGTTAAAGCTTGAGTCATTGTATATGACTAAATCCCTCGCTAATAAAATTCGCCTCAAAGAACGATTGTACACGTTCCGTATGAATGAAGGTACTCCCATTCAATCTCATCTTGATGAGTTTAATTCTATTATTATTGACTTGGAAAATCTAGATGTTAAAATTGATGATGAGGATAAGGCTATTTTGTTGGTAGTCTCTTTGCCTTCTACCTTTAAGCATTTTAAAGAAATTATGCTTTATGGAAATCATGAAACCTTGTCTCTTGAGGATGTTAAGTCTAATTTACTATCCAAGGAAAAATTTGATCATGAGTTGCATTCCGAGGATAAAGGCGAGGGTTTGACCATTAGAGGTAGAAGTGCTGAAAAATCCAATAAATATGAGAAAAAGAAATCTAGGTCCAAGTCTAGAGGACGAAAGTCCACTAATACCTGTCGATATTGTAAAAAGTTTGGGCATGATATTTCTGAGTGTTATTCCTTGAAAAGGAAAAAGGAAAAAGAGGAAAAAGGTAAACAACCTCAAACAACTGCTGAAGCTAGTGTAGTTAATTCCGAGTCAGAGGGTGATATATTGTCTGTGATGTCTGAAAAGAGGTCTAAGACTGAGTGGATTCTTGATTCTGGATGCACCTTTCATAGTTGTCCTCATAAGGACTGGTTCACTAGTTTTGATCCTGTTGATAGTGGTGTTGTCTTGATGGGTGATGATACTCAATGCAAGATTTTTGGTATTGGTTCAATTCAGATCAAGACCCATGACAATTGCATTAGGACACTCACCAATGTTCGTTATGTTCCTAATGTAACTCGTAATCTAATCTCTCTTGGTACTCTTGAGTCACTTGGTTATAGGTACACAGCTCAAGGTGGAGTTTTGAGAATATTTTCAGGGCCCCGAACAATTATGAAAGCAAATCGTGTGGGGAACCTATATGTTTTGCAAGGCTCTACTATGACAGGTACTGCAGCTGTTTCGTCATCATCTATCCCTAATTCTGAGAACACTCAGTTATGGCACATGCGTCTGGGCCACATGAGTGAAAAGGGAATGACTGTTCTAAGCAAGAGAGGTCTCCTTGGTGATCAAGGCACTGGTAAGCTCGAGTTCCGTGAGCATTGTGTGTTTGGGAAACAAAAGAAGGTCAGTTTCTCTACAGCTATTCATCGTACTAAAGGTATCCTTGATTACATACATTCTGATTTATGGGGACCATCTAAAGTTGCCTCTATTAGTGGTAAACGTTATATGATGACTATTGTTGATGATTATTCTCGTAAAGTCTGGGTTTATTTTTTGAGACATAAAAATGAAGCATTTCCTACTTTTAAGAAGTGGAAAACTCTTGTTGAGAACCAGACTGAGAGAAAAGTCAAAAAGCTTAGAACTGATAATGGATTGGAGTTTTGTGAGAGTGACTTCAATGAATTTTGTGCAACCAATGGCATTGCTAGACATGAAAGCCTTCCAAGAAGGCCCCAGCAAAATGGTGTTGCAGAACGAATTAATAGAACTATTTTGGAGAGAGCTCGTTGTATGCTTTCAAATTCTGGGTTATGGAACCGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_25587.p1 GENE.S_Transcript_25587~~S_Transcript_25587.p1 ORF type:complete len:609 (+),score=102.45,UBN2_2|PF14227.2|4.2e-38,rve|PF00665.22|3.5e-23,UBN2|PF14223.2|2.6e-17,gag_pre-integrs|PF13976.2|7.2e-14 S_Transcript_25587:670-2496(+)
MTSIAKFEVEKFDGKISFNTWKVQMRAILVQNGLKKALDGKAKKPATMTDEQWEELDEKALFAIQLCLSKEVLREVLHETTVAGLWLKLESLYMTKSLANKIRLKERLYTFRMNEGTPIQSHLDEFNSIIIDLENLDVKIDDEDKAILLVVSLPSTFKHFKEIMLYGNHETLSLEDVKSNLLSKEKFDHELHSEDKGEGLTIRGRSAEKSNKYEKKKSRSKSRGRKSTNTCRYCKKFGHDISECYSLKRKKEKEEKGKQPQTTAEASVVNSESEGDILSVMSEKRSKTEWILDSGCTFHSCPHKDWFTSFDPVDSGVVLMGDDTQCKIFGIGSIQIKTHDNCIRTLTNVRYVPNVTRNLISLGTLESLGYRYTAQGGVLRIFSGPRTIMKANRVGNLYVLQGSTMTGTAAVSSSSIPNSENTQLWHMRLGHMSEKGMTVLSKRGLLGDQGTGKLEFREHCVFGKQKKVSFSTAIHRTKGILDYIHSDLWGPSKVASISGKRYMMTIVDDYSRKVWVYFLRHKNEAFPTFKKWKTLVENQTERKVKKLRTDNGLEFCESDFNEFCATNGIARHESLPRRPQQNGVAERINRTILERARCMLSNSGLWNR*

Click here to download the sequence:
Link to NCBI Protein BLAST