Transcript Information: S_Transcript_2565.p1


Annotated TAIR IDAT5G04810.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1390049-1393760 | Forward length=952
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.040309454576
Replicate 226.119277933769
Replicate 328.916853818516
Condition 2: 8 Hour
Replicate 143.870619099802
Replicate 246.366170469873
Replicate 342.283325892619
Condition 3: 24 Hour
Replicate 124.076230118847
Replicate 223.474060202672
Replicate 323.264051172441


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_2565.p1 GENE.S_Transcript_2565~~S_Transcript_2565.p1 ORF type:5prime_partial len:979 (+),score=214.33,PPR_2|PF13041.2|6.7e-08,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|99,PPR_2|PF13041.2|0.0032,PPR_2|PF13041.2|0.00047,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|4.2e-05,PPR_2|PF13041.2|3.7e-10,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|7.4e-14,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|4.8e-09,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|8.4e-14,PPR_2|PF13041.2|3.1e-06,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|0.085,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|0.0071,PPR_1|PF12854.3|7.4e-05,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|2.2e-10,PPR_1|PF12854.3|7.8e-05,PPR_1|PF12854.3|1.3e-05,PPR_1|PF12854.3|0.00086,PPR_1|PF12854.3|4.9e-05,PPR_1|PF12854.3|5e-08,PPR_1|PF12854.3|4.2e-09,PPR_1|PF12854.3|5.5e-08,PPR_1|PF12854.3|4.2e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|8.6e-06,PPR|PF01535.16|0.0044,PPR|PF01535.16|0.00051,PPR|PF01535.16|0.0026,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.017,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|0.00029,PPR|PF01535.16|0.00048,PPR|PF01535.16|0.0055,PPR|PF01535.16|6.1e-06,PPR|PF01535.16|4e-06,PPR|PF01535.16|1.7e-06,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|0.00041,PPR_3|PF13812.2|29,PPR_3|PF13812.2|0.053,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.00026,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.00031,PPR_3|PF13812.2|5.6e-08,PPR_3|PF13812.2|7.4e-05,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|1.6e+03,ATP13|PF12921.3|0.077,ATP13|PF12921.3|3.2e+03,ATP13|PF12921.3|0.53,ATP13|PF12921.3|0.6,ATP13|PF12921.3|50,ATP13|PF12921.3|16,ATP13|PF12921.3|4.8,RRM_1|PF00076.18|1.4e-09,RRM_1|PF00076.18|1.4e+04,TPR_11|PF13414.2|1.9e+02,TPR_11|PF13414.2|3.1e+02,TPR_11|PF13414.2|1.3e+04,TPR_11|PF13414.2|0.0053,TPR_11|PF13414.2|3.2,TPR_11|PF13414.2|7.1e+03,TPR_14|PF13428.2|68,TPR_14|PF13428.2|12,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|20,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.8e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|2.3e+03,TPR_12|PF13424.2|34,TPR_12|PF13424.2|5.7e+02,TPR_12|PF13424.2|3.7e+02,TPR_12|PF13424.2|17,TPR_12|PF13424.2|1.4e+04,TPR_12|PF13424.2|21 S_Transcript_2565:1-2937(+)
GGGGAACTGTGCTTTTATGTTTGGCTCCCAACGGCTCCGCCACCTACACCTGCTGTCTTCCTGGGTATTTACAGTATCTTCAAAACAGAAAACAGAGAGGGGAAATGGTGTTATGCTACAGTATCTTCAGGCAGTGAGCTCCACTTACAGTATCTGGATATGTTCTCTCTCTCCTCCACCACCACCACTCACTCTCCTTTCTCTTTCCCTCCTCTCCTCACTAGTAAATCTCACCCCCCTTTTTCTTTCTCCCTTAACAACAACTCCTCAGACCCTTCTTCTTCTTCTCAATTGTCATCCCAATTCCAATCCCATCTTCGCCGCCCTCAAACCCTTAAACCCTCGAACCCTCCTCCTAAACCCCCTTCTTCAAACCCTCTCAAAACCCTCCAATTTCCCAAACCCCCCACTACTCCTCACTCATTAACCCCCAAACTTCGCCTCACCAGCAAAATCTCCCCACCGCCCCCGCCACCCCCAGCCCCATTAATCTCTTCGTCCCCTGAAAATGTTGTTTCGGAGGCCGAGGGTAATGATGAGGAGGGTTCTAAGGAGGTGGAGGAATTTCGACAAGTGGGTAAGATATTTGTAGGGAATTTGCCCACCTGGGTGAAGAAAACCGAGGTGGCCGAGTTCTTCCGGCAATTCGGGCCAATTCAGAATGTGATATTGATTAAAGGGCATGAGGATTTTGAGAGGAATTTGGGGTTTGGGTTTGTTGTTTATGGTGGCCCCACCGCCGAGAAGTCAGCCCTCGAGGCTGTGGAGTTTGATGGGGTGGAGTTTCATGGGAGGATTTTGACCGTCAAATTGGATGATGGGAGGAGATTGAAAACCCGGGCCGTTGAGAGGGGGAGGTGGGTTCAGGAGGGTGGGGATGACAGGGAGTATAGGTCCCAGTGGCATCAGGAGCGGGACGGGTCTCGGAGGGAGTTTCGGAGGGTTCTGGACTCCCATCCCGAGAATTGGCAGGTCGTTGTTCGTGCTTTCGAGAGGATTAGCAAGCCATCAAGGAAAGAGTATGGGTTGATGGTATCTTATTATGCAAGACGTGGGGACATGCATCGTGCACGTGAAACTTTTGAAAGAATGCGAGCCAGAGGAATAGAGCCAACTTCACATGTCTTTACAAGCCTTATCCATGCCTATGCAGTTGGCAGAGACATGGAAGAAGCAATGTCATGTGTGAGGAAGATGAAGGAAGAAGGAATTGAGATGAGTTTGGTGACGTACAGCATTCTTGTTGGAGGCTTTGCTAGAATTGGCAATGTTGAGGCTGCAGATCAATGGTTCAATGAGGCAAAAGTGCAGTGTACCACTCTGAATGGAATAATCTATGGCAATATAATATATGCCTACTGCCAAACTTGTAACATGGACCGTGCTGAAGCTTTAGTTAGGGAGATGGAAGAACAGGGTATTGATGCTCCAATTGATATATACCATACTATGATGGATGGTTACACCATGATTGGAAACGAAGAAAAATGTTTGATTGTGTTTGAGAGATTGAAGGAATGTGGGTTTGTGCCTTCTGTCATCACTTATGGGTGTCTAATTAATCTTTACACTAAGATGGGAAAAGTTTCGAAGGCCTTAGAGGTTAGCAAAATGATGAAATCTTCTGGCATTCGGCATAACATGAAGACCTATTCGATGTTGATCAATGGTTTTTTGAGGTTGAAAGATTGGGCTAATGCATTTGCTATTTTTGAAGATGTTATAAGTGATGGTCTCAAACCAGATGTTGTGCTTTACAATAATATTATTAGAGCTTTTTGTGGAATGGGTAATATGGACCGTGCCATTCGCATGGTTGAGCAGATGAGGAAAGAACGACATAGGCCCACCACAAGAACTTTTATGCCCATCATTCATGGTTTTGCTAGAGCTGGAGATATAAGAAGAGCCCTTGAAATTTTCAATATGATGCAGAGGAATGGATGCATTCCAACTGTGCACACATTTAATGCCTTGATTCTCGGCCTTGTTGAAAAGCGCCAGATGGAGAAGGCAGTTGAAATATTAGATGAGATGGCATTAGCAGGGATAACCCCAAATGTGCATACATATACGACAATTATGCAAGGTTACGCAGCTTTGGGTGATACTGGAAAAGCCTTTGAATACTTTACTAAAGTAAAAGAGGAAGGACTCCAGCTTGATGTATATGCATATGAGGCCTTGCTCAAGGCATGTTGCAAATCTGGGAGGATGCAAAGTGCTCTAGCTGTCACGAGGGAGATGAGTATGCAGAATATCCCAAGGAATACATTTGTTTATAATATTTTAATTGATGGGTGGGCTCGAAGAGGTGATGTTTGGGAGGCTGCGGACTTACTCCAACAAATGAGACAAGATGGTGTTCAGCCGGATATTCACACTTACACATCCTTCATAAACGGATGTTGCAAGGCTGGAGATATGATGAGAGCAATGAGGACAATTCAAGAAATGGAAGCAGTAGGGGTGAAGCCTAACGTCAAGACATACACAACACTGATACATGGTTGGGCACGTGCATCTCTACCAGAAAAGGCACTGAGGTGTTTTGAAGAGATGAAAACAGCTGGCTTAAAGCCGGATAAAGCAGTGTATCATTGCCTGATGACATCTTTATTGTCAAGAGCTACTGTAGCAGAGGAGTACATATGCTCTGGAATCCTGAGTATTTCCCGAGAAATGACAGAATATGGCTTGACAGTTGATATGGGCACTGCTGTTCACTGGTCCAGGTGTTTGCGTAAGATTGAAAGTACAGGTGGCGAACTTACAGAAGCTTTGCAGAAAACCTTCCCACCTGACTGGAATGCTAGTAACCTTCCATCGTCATCTGTAGCTGACGCTAATGAGTCGGAATCTGAAGTTGAGGATATTGATGCAAGTTATGAAGATTTCATGGATAGTGATGATGACAATGATGAAATAGATATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_2565.p1 GENE.S_Transcript_2565~~S_Transcript_2565.p1 ORF type:5prime_partial len:979 (+),score=214.33,PPR_2|PF13041.2|6.7e-08,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|99,PPR_2|PF13041.2|0.0032,PPR_2|PF13041.2|0.00047,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|4.2e-05,PPR_2|PF13041.2|3.7e-10,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|7.4e-14,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|4.8e-09,PPR_2|PF13041.2|1.9e-15,PPR_2|PF13041.2|8.4e-14,PPR_2|PF13041.2|3.1e-06,PPR_1|PF12854.3|1.7,PPR_1|PF12854.3|0.085,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|0.0071,PPR_1|PF12854.3|7.4e-05,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|2.2e-10,PPR_1|PF12854.3|7.8e-05,PPR_1|PF12854.3|1.3e-05,PPR_1|PF12854.3|0.00086,PPR_1|PF12854.3|4.9e-05,PPR_1|PF12854.3|5e-08,PPR_1|PF12854.3|4.2e-09,PPR_1|PF12854.3|5.5e-08,PPR_1|PF12854.3|4.2e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|8.6e-06,PPR|PF01535.16|0.0044,PPR|PF01535.16|0.00051,PPR|PF01535.16|0.0026,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.017,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|0.00029,PPR|PF01535.16|0.00048,PPR|PF01535.16|0.0055,PPR|PF01535.16|6.1e-06,PPR|PF01535.16|4e-06,PPR|PF01535.16|1.7e-06,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|0.00041,PPR_3|PF13812.2|29,PPR_3|PF13812.2|0.053,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.00026,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.00031,PPR_3|PF13812.2|5.6e-08,PPR_3|PF13812.2|7.4e-05,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|1.6e+03,ATP13|PF12921.3|0.077,ATP13|PF12921.3|3.2e+03,ATP13|PF12921.3|0.53,ATP13|PF12921.3|0.6,ATP13|PF12921.3|50,ATP13|PF12921.3|16,ATP13|PF12921.3|4.8,RRM_1|PF00076.18|1.4e-09,RRM_1|PF00076.18|1.4e+04,TPR_11|PF13414.2|1.9e+02,TPR_11|PF13414.2|3.1e+02,TPR_11|PF13414.2|1.3e+04,TPR_11|PF13414.2|0.0053,TPR_11|PF13414.2|3.2,TPR_11|PF13414.2|7.1e+03,TPR_14|PF13428.2|68,TPR_14|PF13428.2|12,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|20,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.8e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|2.3e+03,TPR_12|PF13424.2|34,TPR_12|PF13424.2|5.7e+02,TPR_12|PF13424.2|3.7e+02,TPR_12|PF13424.2|17,TPR_12|PF13424.2|1.4e+04,TPR_12|PF13424.2|21 S_Transcript_2565:1-2937(+)
GELCFYVWLPTAPPPTPAVFLGIYSIFKTENREGKWCYATVSSGSELHLQYLDMFSLSSTTTTHSPFSFPPLLTSKSHPPFSFSLNNNSSDPSSSSQLSSQFQSHLRRPQTLKPSNPPPKPPSSNPLKTLQFPKPPTTPHSLTPKLRLTSKISPPPPPPPAPLISSSPENVVSEAEGNDEEGSKEVEEFRQVGKIFVGNLPTWVKKTEVAEFFRQFGPIQNVILIKGHEDFERNLGFGFVVYGGPTAEKSALEAVEFDGVEFHGRILTVKLDDGRRLKTRAVERGRWVQEGGDDREYRSQWHQERDGSRREFRRVLDSHPENWQVVVRAFERISKPSRKEYGLMVSYYARRGDMHRARETFERMRARGIEPTSHVFTSLIHAYAVGRDMEEAMSCVRKMKEEGIEMSLVTYSILVGGFARIGNVEAADQWFNEAKVQCTTLNGIIYGNIIYAYCQTCNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFERLKECGFVPSVITYGCLINLYTKMGKVSKALEVSKMMKSSGIRHNMKTYSMLINGFLRLKDWANAFAIFEDVISDGLKPDVVLYNNIIRAFCGMGNMDRAIRMVEQMRKERHRPTTRTFMPIIHGFARAGDIRRALEIFNMMQRNGCIPTVHTFNALILGLVEKRQMEKAVEILDEMALAGITPNVHTYTTIMQGYAALGDTGKAFEYFTKVKEEGLQLDVYAYEALLKACCKSGRMQSALAVTREMSMQNIPRNTFVYNILIDGWARRGDVWEAADLLQQMRQDGVQPDIHTYTSFINGCCKAGDMMRAMRTIQEMEAVGVKPNVKTYTTLIHGWARASLPEKALRCFEEMKTAGLKPDKAVYHCLMTSLLSRATVAEEYICSGILSISREMTEYGLTVDMGTAVHWSRCLRKIESTGGELTEALQKTFPPDWNASNLPSSSVADANESESEVEDIDASYEDFMDSDDDNDEIDI*

Click here to download the sequence:
Link to NCBI Protein BLAST