Transcript Information: S_Transcript_257255.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value3E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6707587910594
Replicate 26.4666796978923
Replicate 36.6775423750968
Condition 2: 8 Hour
Replicate 14.0444705773873
Replicate 25.2072406316605
Replicate 36.7990203567613
Condition 3: 24 Hour
Replicate 13.954677183642
Replicate 25.4705752080838
Replicate 32.8266084247113


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_257255.p1 GENE.S_Transcript_257255~~S_Transcript_257255.p1 ORF type:internal len:116 (-),score=13.94 S_Transcript_257255:2-346(-)
CACGGCCCCTTTCTAAGTCTCCACGCCGCCTCCTTAACCCCTTCAAAAATGTTAAGGTTCGGAAAACTGTTGGCAAAACCCCATAAAAGAAAAACCAAGAACAAAAAAAACAAGACCAGAACAAAAAGAACCAGAATTCCTATTTCCCAAGAAGAAAATGGTACCATTCTTTCCAATAATCAACAACCCATTAATCATCATTCAGATGAAGAAGAAGAAGAAGAAGAAGGTTTCAGCTTGAAAACCACAGCTCCATCAAACTGCCATAGAGTACAACCACTGGGAAACCTTTACCTTTCCCCAAAATGCCATAACTCAAGGGACACAGGCTTAGGTAACCTCAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_257255.p1 GENE.S_Transcript_257255~~S_Transcript_257255.p1 ORF type:internal len:116 (-),score=13.94 S_Transcript_257255:2-346(-)
HGPFLSLHAASLTPSKMLRFGKLLAKPHKRKTKNKKNKTRTKRTRIPISQEENGTILSNNQQPINHHSDEEEEEEEGFSLKTTAPSNCHRVQPLGNLYLSPKCHNSRDTGLGNLK

Click here to download the sequence:
Link to NCBI Protein BLAST