Transcript Information: S_Transcript_25755.p1


Annotated TAIR IDAT1G04790.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:1345469-1348143 | Forward length=634
E-Value8.7E-59
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4679011158489
Replicate 26.7519743904463
Replicate 36.1475786945335
Condition 2: 8 Hour
Replicate 18.5179001554066
Replicate 27.2965655764626
Replicate 37.1665349706403
Condition 3: 24 Hour
Replicate 18.2859902895357
Replicate 26.3823377427645
Replicate 36.8853282140403


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_25755.p1 GENE.S_Transcript_25755~~S_Transcript_25755.p1 ORF type:complete len:696 (+),score=152.73,zf-RING_2|PF13639.2|7.3e+03,zf-RING_2|PF13639.2|1e+04,zf-RING_2|PF13639.2|1.5e-11,zf-RING_11|PF17123.1|6.2e+03,zf-RING_11|PF17123.1|3.5e+03,zf-RING_11|PF17123.1|5.8e+03,zf-RING_11|PF17123.1|4.5e+03,zf-RING_11|PF17123.1|7.2e-09,zf-RING_11|PF17123.1|5.6e+03,zf-C3HC4|PF00097.21|2.3e-07,zf-C3HC4_2|PF13923.2|5e-07,zf-rbx1|PF12678.3|1.3e-05 S_Transcript_25755:185-2272(+)
ATGGATGAAGAACGTAATTCTGCCACTTACCCACCTCCACAATTCGTTACAGGGGCTGATGCTGAAATGGGTTTAGCTGATGTTGACTATGATCAAATTGTGGTTGTTCCTGAAACTCCTGATAGGATGCCTAAACAGCAGAGGAATTTTAGGCATTCTGGGTTAGTAGGTAAAGGTATTTTGGATAGAAGGGGTAGGCTTTTTGGTGATAGTGCCCGGCACTTGGTGTTGCACTCTAATCATCGGAGCAGTTTTAGGGATGTTGGTCATAGCGAGGGTACTGGCAGTTCTTCCATTCCTTCGTCTATAACAGCTGCAGGAACGAATTCTGAGCGCATAGGCAGATTTCATTCGAACAGTCACCATTTGGATGGTGATAAAGTTTCGCATCCTAGATCATCAGGAATGTCTCATAACCACAATAGAAGACATATGACTGTTTTGGATGAACCCCGCGAACCAAAGTCTCCATGTAAAATTGTGGGAAAGGATTCGGGGTCTCAGAAAATGAGTAATGGGTATTTGGTTCTTAAGGATGGTGTCTCTTTACGTACTGCTGGAGATTCGTCTATGTCTCCACGGTATGACAGTAAGGGAAAGAGGAAGATTGGTAATGATAAACCTGTTTGTGATGCTCATCATATGAAAGGCCACATTTGCCTTGATGCTTCAAATTATAATGCTGAAAAAAGTCTCCCCATTCCTTCTCAGCCTGAGGGATTACCCAGAGCGACTTTTCGGAAGAGGTTGGTACGGAATGGGTGTATTTCTCCTCATAATATAGCAAAGGCAAAACAAATAGCAGAGAGTTCTGTTAATAGTTCTGTGGATGCTGATACCGTTGCAGTATCTGGTGGCTCTAATCGTGTGATTGATGTTGACGAAGTCCCTGCTAATGGAAATGCTGCAACTGGAGCCAAAGGAAAAGGAGTGGTAGTTCATCCTTGTTCTCCAAAGGGCCACGGGGATAGGAGGGGTGATGCTCGATGCTTAACTGATAAATGGCATAAGGAAAAAATGCAAGAGCCTGACATCATCATTAGCCAAGAGAACATTGACAACTCGAAGAAGACTCATTTGGGCAAATGCCTGTCTTCATTCGGTTCAAATGCTTCAGAACCAGTGCTTGTGCTGAATGAGGATCAGTTTTGCACGCCAAGCACATCTAGCAGCAAAAGATGGAAGAGGCATGATGCTGCTTCAGAAAAGAGTTCAGAGGTGATATGTTTGAGTTCGGGTGGTGAGTCATCAGCTGCTCAGTTGGAAGTGAACCGCGGTCGTCTTTGTCAGGGGGCCTTGGGTTCTTCGATAGCTATTCCTGAGTTGTCTTCTGAAGTGAGAGAGAGTGAATCTCCTACTGAAGCCAGGGAAATACAAGTTCAAGTAGATGAGATGCTGGCTCGTGAGTTACAGGAACAACTATATAATGAGATGCCAGAAGCTGCAACTGATGAGGGAGGTTCAATAACCTGGGTACACCAGCAGGTAGACAACATGCAGCAGGCTTCTTCAAGAAGAATCCATCCTGTAAATACTACTAGACGGTTACCTGCACCAGCTACACGGAGACAGCCTCACTCCCAGTCTTTACGCAATCGTTTGTTTCGTCGAGGAGCTCATGCACGGGGTTCTACATCAAATGTAGCAAGGTTAAGGAGTCGCATCAGTCGTCATCCTTCCTTGCTGCCATCTGGAGGGAGGAATATGTTATTCCCTTCAGATATGGACTTAGACATGAGAATGGACTTATTGGAGGCACTAGAGGCTGTGGTCAATGAAGATATTAGAATGGTTAATCAGCTGCTTGATTCTGACCGGGAATTCAATGAGAATGACTATGAGATGTTGTTAGCCCTTGATGAGAACAATCATGAACATCTTGGTGCATCAGTTGCTCAGATAGACAACCTCATAGAATCTACTGTAACTACCGAGAGCACTGAAGTCTGTTCCATTTGTCTGGAAGCCCCAGCCATTGGGGACACCATACGTCATCTCCCTTGTGCTCACAGATTTCACAAAGATTGTATTGACCCATGGCTCAGAAGAAAAAGATTTTGCCCCATCTGCAAGTCAGACGTCAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_25755.p1 GENE.S_Transcript_25755~~S_Transcript_25755.p1 ORF type:complete len:696 (+),score=152.73,zf-RING_2|PF13639.2|7.3e+03,zf-RING_2|PF13639.2|1e+04,zf-RING_2|PF13639.2|1.5e-11,zf-RING_11|PF17123.1|6.2e+03,zf-RING_11|PF17123.1|3.5e+03,zf-RING_11|PF17123.1|5.8e+03,zf-RING_11|PF17123.1|4.5e+03,zf-RING_11|PF17123.1|7.2e-09,zf-RING_11|PF17123.1|5.6e+03,zf-C3HC4|PF00097.21|2.3e-07,zf-C3HC4_2|PF13923.2|5e-07,zf-rbx1|PF12678.3|1.3e-05 S_Transcript_25755:185-2272(+)
MDEERNSATYPPPQFVTGADAEMGLADVDYDQIVVVPETPDRMPKQQRNFRHSGLVGKGILDRRGRLFGDSARHLVLHSNHRSSFRDVGHSEGTGSSSIPSSITAAGTNSERIGRFHSNSHHLDGDKVSHPRSSGMSHNHNRRHMTVLDEPREPKSPCKIVGKDSGSQKMSNGYLVLKDGVSLRTAGDSSMSPRYDSKGKRKIGNDKPVCDAHHMKGHICLDASNYNAEKSLPIPSQPEGLPRATFRKRLVRNGCISPHNIAKAKQIAESSVNSSVDADTVAVSGGSNRVIDVDEVPANGNAATGAKGKGVVVHPCSPKGHGDRRGDARCLTDKWHKEKMQEPDIIISQENIDNSKKTHLGKCLSSFGSNASEPVLVLNEDQFCTPSTSSSKRWKRHDAASEKSSEVICLSSGGESSAAQLEVNRGRLCQGALGSSIAIPELSSEVRESESPTEAREIQVQVDEMLARELQEQLYNEMPEAATDEGGSITWVHQQVDNMQQASSRRIHPVNTTRRLPAPATRRQPHSQSLRNRLFRRGAHARGSTSNVARLRSRISRHPSLLPSGGRNMLFPSDMDLDMRMDLLEALEAVVNEDIRMVNQLLDSDREFNENDYEMLLALDENNHEHLGASVAQIDNLIESTVTTESTEVCSICLEAPAIGDTIRHLPCAHRFHKDCIDPWLRRKRFCPICKSDVR*

Click here to download the sequence:
Link to NCBI Protein BLAST