Transcript Information: S_Transcript_258342.p2


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value8E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5679211718157
Replicate 22.7094653842562
Replicate 31.941340640379
Condition 2: 8 Hour
Replicate 12.2447779281193
Replicate 24.3173742988946
Replicate 32.2437734321033
Condition 3: 24 Hour
Replicate 12.682704990073
Replicate 21.3916375529336
Replicate 33.5399360568584


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_258342.p2 GENE.S_Transcript_258342~~S_Transcript_258342.p2 ORF type:complete len:114 (+),score=1.20 S_Transcript_258342:922-1263(+)
ATGCCATTTGTATATGTATTACCTGGTTGGGAAGGATCAGCGGCAAATGGAAGGGTACTTCAAGATGCCCTATCAAGACCAAATGACCTAAGAGTTCCTCGTGGTAAGATAGTATGTGGAATTAGAAAATGTATTCTAATTTTTTCTTTTCTTTTTTTATCATTTTTTGGCTCCATTATTTACAAGAACATAATAAGAGAGTATATGTTCATGATAGGTTGTTATTACCTTGTTGACGCTGGCTACAAGAACTGTGACGGTTTTCTTGCACCGTATAGAGGCCAACGTTATCATCTACAAGAATGGTCTAATCCTCCAACTAAAAAAGAGCTCTTAATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_258342.p2 GENE.S_Transcript_258342~~S_Transcript_258342.p2 ORF type:complete len:114 (+),score=1.20 S_Transcript_258342:922-1263(+)
MPFVYVLPGWEGSAANGRVLQDALSRPNDLRVPRGKIVCGIRKCILIFSFLFLSFFGSIIYKNIIREYMFMIGCYYLVDAGYKNCDGFLAPYRGQRYHLQEWSNPPTKKELLI*

Click here to download the sequence:
Link to NCBI Protein BLAST