Transcript Information: S_Transcript_258353.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.26581674165681
Replicate 30.22220163956145
Condition 2: 8 Hour
Replicate 11.2846620672972
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.52638273471311
Replicate 20.54611594159873
Replicate 31.5194002653684


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_258353.p1 GENE.S_Transcript_258353~~S_Transcript_258353.p1 ORF type:complete len:83 (+),score=2.80 S_Transcript_258353:73-321(+)
ATGAAGAAAGTTATTCATTGCTACAAATGCTCTCGATGTTTGCAACTAGACATGCAATTTGTATATGTATTATCTGGTTGGGAAGGATCAACAGCAGAAGATGAAAGGGTACTTCAAGATGCCCTATCAAGACCACATGGCTTAAGAGTTCCTCGTGATAAGATAGTATGTAAAATTAGAAAAAGCAGTTTATTCTTTCTTTTTATTTTTTATCATTTTTTGACTTCAATGTTGTTGACAAGAACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_258353.p1 GENE.S_Transcript_258353~~S_Transcript_258353.p1 ORF type:complete len:83 (+),score=2.80 S_Transcript_258353:73-321(+)
MKKVIHCYKCSRCLQLDMQFVYVLSGWEGSTAEDERVLQDALSRPHGLRVPRDKIVCKIRKSSLFFLFIFYHFLTSMLLTRT*

Click here to download the sequence:
Link to NCBI Protein BLAST