Transcript Information: S_Transcript_258598.p1


Annotated TAIR IDAT1G50350.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19950.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:18648756-18649227 | Forward length=133
E-Value1.7E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1570870102252
Replicate 21.4388775798379
Replicate 30.6013935679435
Condition 2: 8 Hour
Replicate 10.69539316251521
Replicate 21.7022058747618
Replicate 31.1584699785316
Condition 3: 24 Hour
Replicate 11.1872219288366
Replicate 21.4780746680227
Replicate 30.82245796973205


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_258598.p1 GENE.S_Transcript_258598~~S_Transcript_258598.p1 ORF type:internal len:92 (+),score=7.77,zinc_ribbon_9|PF14369.2|7.6e-13 S_Transcript_258598:1-273(+)
CCTCAATACTACTTTTGTTACGAATGCAATCGAACCATATCTCTAACCCCGACCCCAACCACAGAACTTCTCTGCCAATCTTGCAACGGTGGTTTCCTCGAAGAAGTCGAAAACCCTAACCCTAATCCCACCACTCCTTCCCCTTTCCCTCTCTCTTCTTCATCCGATCCTTTCTTCCCCTTCCTCTCCTCGCCTGACTCTCTCGATCTCTCTTCCATGTTAGGCCCAGCCCACCACGACCCACGATCCTCCTCCCCTTTCCTTTCCAAGATC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_258598.p1 GENE.S_Transcript_258598~~S_Transcript_258598.p1 ORF type:internal len:92 (+),score=7.77,zinc_ribbon_9|PF14369.2|7.6e-13 S_Transcript_258598:1-273(+)
PQYYFCYECNRTISLTPTPTTELLCQSCNGGFLEEVENPNPNPTTPSPFPLSSSSDPFFPFLSSPDSLDLSSMLGPAHHDPRSSSPFLSKI

Click here to download the sequence:
Link to NCBI Protein BLAST