Transcript Information: S_Transcript_25908.p1


Annotated TAIR IDAT5G41560.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16621427-16622619 | Reverse length=101
E-Value2E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.34472403894581
Condition 2: 8 Hour
Replicate 10.5979081397327
Replicate 20.83633079027015
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_25908.p1 GENE.S_Transcript_25908~~S_Transcript_25908.p1 ORF type:complete len:107 (-),score=9.53 S_Transcript_25908:688-1008(-)
ATGTACAACAAGACTTCAACTACAACACCAGGATGCATCCACAGGCAACCAACTACTCATACAGAAGCCCCTGAAGTAGATGCTCTCAGATGCTTGGCTCCATTCTCGGGGGCAATATGTTCCGAAGCAGCTCTCTTGGATCGCAGCTACAACCAAAAGTCGCAACATAAAGTTGTGCACATTATCAAACAGAAATTCGTATCAGCAAGATCAGCCCGAAAAGAAAAAAAAGAAACACAGAAATTATACCTTCTCCTCCGCATGATTATAGAGGTGTCTGATCAGAATGTTTTTACTTTCAGTACAAATGACTGCAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_25908.p1 GENE.S_Transcript_25908~~S_Transcript_25908.p1 ORF type:complete len:107 (-),score=9.53 S_Transcript_25908:688-1008(-)
MYNKTSTTTPGCIHRQPTTHTEAPEVDALRCLAPFSGAICSEAALLDRSYNQKSQHKVVHIIKQKFVSARSARKEKKETQKLYLLLRMIIEVSDQNVFTFSTNDCK*

Click here to download the sequence:
Link to NCBI Protein BLAST