Transcript Information: S_Transcript_25911.p1


Annotated TAIR IDAT5G41560.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16621427-16622619 | Reverse length=101
E-Value1E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.301091108716
Replicate 26.6856938053075
Replicate 36.7064494849457
Condition 2: 8 Hour
Replicate 115.293966793095
Replicate 215.366522297994
Replicate 313.564630294079
Condition 3: 24 Hour
Replicate 18.3849047741675
Replicate 29.157095586403
Replicate 37.6430437591261


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_25911.p1 GENE.S_Transcript_25911~~S_Transcript_25911.p1 ORF type:complete len:99 (+),score=16.73,DDA1|PF10172.5|3.1e-25 S_Transcript_25911:49-345(+)
ATGGGTTCTTTGTTTGGTGACTGGCCTTCCCATGATCTTCACAACTTCAGCCAACTTCGACCCTCTGATCCTTCAAATCCCTCTAGATTAACTCCTGCAACCTACCGTCCTACTCACAGTCGCACTCTTCCCCCACTTGATCAAGTCATTTGTACTGAAAGTAAAAACATTCTGATCAGACACCTCTATAATCATGCGGAGGAGAAGCTGCGATCCAAGAGAGCTGCTTCGGAACATATTGCCCCCGAGAATGGAGCCAAGCATCTGAGAGCATCTACTTCAGGGGCTTCTGTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_25911.p1 GENE.S_Transcript_25911~~S_Transcript_25911.p1 ORF type:complete len:99 (+),score=16.73,DDA1|PF10172.5|3.1e-25 S_Transcript_25911:49-345(+)
MGSLFGDWPSHDLHNFSQLRPSDPSNPSRLTPATYRPTHSRTLPPLDQVICTESKNILIRHLYNHAEEKLRSKRAASEHIAPENGAKHLRASTSGASV*

Click here to download the sequence:
Link to NCBI Protein BLAST