Transcript Information: S_Transcript_25913.p1


Annotated TAIR IDAT5G41560.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16621427-16622619 | Reverse length=101
E-Value2.9E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.9425220613514
Replicate 28.3934525490545
Replicate 36.6153292473785
Condition 2: 8 Hour
Replicate 19.2719088335361
Replicate 211.429096587686
Replicate 310.889617798197
Condition 3: 24 Hour
Replicate 14.7488877153466
Replicate 26.8976817841057
Replicate 33.8381371920829


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_25913.p1 GENE.S_Transcript_25913~~S_Transcript_25913.p1 ORF type:complete len:92 (+),score=11.73,DDA1|PF10172.5|2.1e-15 S_Transcript_25913:180-455(+)
ATGGGTTCTTTGTTTGGTGACTGGCCTTCCCATGATCTTCACAACTTCAGCCAACTTCGACCCTCTGATCCTTCAAATCCCTCTAGATTAACTCCTGCAACCTACCGTCCTACTCACAGTCGCACTCTTCCCCCACCTGATCAAGCTGCGATCCAAGAGAGCTGCTTCGGAACATATTGCCCCCGAGAATGGAGCCAAGCATCTGAGAGCATCTACTTCAGGGGCTTCTGTATGAGTAGTTGGTTGCCTGTGGATGCATCCTGGTGTTGTAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_25913.p1 GENE.S_Transcript_25913~~S_Transcript_25913.p1 ORF type:complete len:92 (+),score=11.73,DDA1|PF10172.5|2.1e-15 S_Transcript_25913:180-455(+)
MGSLFGDWPSHDLHNFSQLRPSDPSNPSRLTPATYRPTHSRTLPPPDQAAIQESCFGTYCPREWSQASESIYFRGFCMSSWLPVDASWCCS*

Click here to download the sequence:
Link to NCBI Protein BLAST