Transcript Information: S_Transcript_260078.p1


Annotated TAIR IDAT1G31440.1
Annotated Gene NameSH3 domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:11256150-11258479 | Reverse length=439
E-Value3E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5381446728853
Replicate 23.698386688832
Replicate 33.0915569157481
Condition 2: 8 Hour
Replicate 16.9030165188407
Replicate 25.0433647222505
Replicate 34.0660287338982
Condition 3: 24 Hour
Replicate 13.4093170765667
Replicate 23.79913604459
Replicate 31.02054514934


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_260078.p1 GENE.S_Transcript_260078~~S_Transcript_260078.p1 ORF type:5prime_partial len:173 (-),score=46.81 S_Transcript_260078:80-598(-)
GGAGTTATGGAAGCCATTAAAAGGCAAGCTACCAAGCTCAGAGAGCAAGTAGCAAAGCAACAACAGGCTCTTCTAAGACAGTTGGGGCATTTTGATGCAGAAGCTATTATCGGAGATGAAGCAGAAGTTGCACGACATCATCTACTTCAAGATTTGTACACTTCTACCAGAGCAGCTAAGCATTTTGAGAAGGATATAGTACGTGGTGTAGAAGGATGCATATCAGTGAGCTCAAAGCAATTGGAAATAGAGAGAAGATTTGGTCAGGACTGTTGCAGATATGAGGCTGAAAATGACTGTAGTACTTCCCCATTGGCAAAAGCTGCCTTGCAAGTTGGCACCTCGCGCAATTTAATGCTAAAGGAAAAGGAGAAGTTGCTTGGAGTTCTAGATGAACAGGTCTGTAAGCCACTTCGAGCACTAGTGAAGAGCGCTGAGCTTGAGGATGCTCGACTTCTGATCAACCAATATGATAGGCTATGGCTGGAAGTGGAAGCTCAGGTTGTAGTTTCTCTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_260078.p1 GENE.S_Transcript_260078~~S_Transcript_260078.p1 ORF type:5prime_partial len:173 (-),score=46.81 S_Transcript_260078:80-598(-)
GVMEAIKRQATKLREQVAKQQQALLRQLGHFDAEAIIGDEAEVARHHLLQDLYTSTRAAKHFEKDIVRGVEGCISVSSKQLEIERRFGQDCCRYEAENDCSTSPLAKAALQVGTSRNLMLKEKEKLLGVLDEQVCKPLRALVKSAELEDARLLINQYDRLWLEVEAQVVVSL*

Click here to download the sequence:
Link to NCBI Protein BLAST