Transcript Information: S_Transcript_260171.p1


Annotated TAIR IDAT5G40820.1
Annotated Gene NameAtaxia telangiectasia-mutated and RAD3-related
Annotated Gene Symbol(s)ATRAD3, ATR, ATATR
Annotation TypeOrtholog
Chromosome Positionchr5:16343860-16353847 | Reverse length=2702
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.48831194926937
Replicate 20.70843819680093
Replicate 30.80369721465232
Condition 2: 8 Hour
Replicate 11.2553937724918
Replicate 21.0604393086109
Replicate 31.1081633311458
Condition 3: 24 Hour
Replicate 10.81834808183419
Replicate 20.62377463054167
Replicate 30.48207271416506


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_260171.p1 GENE.S_Transcript_260171~~S_Transcript_260171.p1 ORF type:3prime_partial len:1308 (+),score=274.15,UME|PF08064.9|5.8e+02,UME|PF08064.9|8.7e-15 S_Transcript_260171:134-4054(+)
ATGGCAAGCCTGTCGAGCTTGGTGCACGAGCTTCGAGAACGAATAGCAGTTTCATCGTCAACACCTAAAGAAGACGACGTCGCTTTGGAGACCAGGTTCCGTTCCGTTCTCCCTAATCTCCTCAACGCCTATGTTATCGCCTCTCCCTCAGCCAATGAGAGAGAAGTAATTGCAGTATTAAAGCTACTGAATCACACTGCCAAGATATTCCCAGGAGTTCTGTACCATGGCAATTCCAATGCCGTCTTGCCTCTTATTGGCCGCATCTTGCCTTTCTTTGCCGAGCCTTCTTTTCGGGGTCAACATGCAGTGATTTTTGAAGCTGTTGGGGCCCTTCTAGCTTTGCTCCGAAGTGGTGATCGCAATGCATACCGGCAGTTTTTCATTGATTCTATGTTAGCCGTTGAAGATCTTGTTCTTGTAGCATCATTGTACTTCAGCAAATCAAGTACTGAAAAGTGTGTTAAGGTCTCTCTGAGATGCTTTTCAGATTCATTCACTGAAATATCTAATGCCGAAGCTCTACTGAGTGATCTTCCTGAATGTAACAAGCCTGGTGATGGTTATGGTATTTTGGTTGATGTCTCACTCAAGGAGAGGTGGCTATCCTTTTCTATTTGGATGATTCACCTCTTGAACAAATGCTTGACTGAGGGAACTCTATATGTTGAAGGACTTGTCACATCTTCTTTCCTTTTGTCCATATGCTCCATGTTATGTTATCAAGATGCCGACTTACATATGGCATGTTTTGGCTTCACTTGCACTATAGGGACAGCTATGAATGATGAAGTTGTTGTATATGAGAAATTTATTCTCACAATAGCAATTATATTGAGTGAAGCTGATGGCAACCTTCCTGTATACAGAGATATGGCATTTGATTCCACTATAGGTAGTTGCCTTCATGCTTTGCACTCCAGATGTCCTTCAGCTATTGTTAAATCTACAGCTGTGGAGCTAGTTTCTGTGTTCAACAACTCGTTGACAAAAACAAAAAGTTCCGAGTTGCAGGTTGCTCTATGCAGTGCGTATGTGCGGATATCTAGGACTTGTCCTCCTAATGTCTGGAAGCCAGCATCTCTGATAAGTATGATTGATTCCCCTGACATCTGCTTCATGTTAAAGGATTGCTTCGAGGTGGCTGTTGGTGTTCTTGGTCCTGACTGTGTTGGAGGAGGCAGCATTAGTGATATTTCTCTGGGGCAGTCCGCAGCATATGATAATAACTCAGGGAGTTTGAAAGCTGGGTGTAAAAGACCATCTGGGAATTTGGGGACTTCCAAAATCAAGCGTCTGAAAGTAGATGGGGAAATGGGATGTAGCTCTGATGGATGGGGAGCCTGCAGTTCCAGTCACCTATGGTCTGAGACAAATAAAAATTATGCTTCTGATATGTGGATGTCACTTGTTTCATATGTCGACTTGCTGAAACCTCCATGTGGCTATACCAATTTTATCAGGGAAGAAGTCGCCCTGGCAGCTCTTAGTATGCTTTGTACAGTCTTCTGTAAATATCCGAATACCAATTTATCACTCAGCATCTTTCAGAAGATCCATTTATGGATTCCATGGATTTGTAAGCAGGCAAATCAGGCCAACTCAGTAATGTTTGACTTGACAAGCTATCTGGAAGCATTGCACAACATACACTTGTTGCCAAGTTCATTTCCTGGGAATTTGAGAAACTCTTGGAGCGACAGTGATAATACAAATCTTATATATTCAATGCTTAAGCTCCCGTGGACCCATTTTCTTGAGGTCAATAAAACCCATCAAACATGGAGAACAAAGTGCCTTTCTATCCAAGTGCTGTCCAAGATTGGTCCTAAATCAGAGTCTCAACTTGATGTTTTGGATATGGGTCTCTATGATGAGGTGGAAGAAGTTAGGTTGGAAGCTGTCATTTCTATGCCATTAATCGTCTTGTCTTCTGGCTTTCATGCCTTTTTGCCTGTTTTTAGACGGTTGGACTTGCTTCAGAAAGAGGTGTGCGAGAATGTCAAAAGGAGAATTCCCTTTGCTCTTGGTTATTTGTCATGCTTGTATGGGTTTTTCCATGAATATGATGCAGATGTTACAAATGCTTATGACTATACAATATCCATTTATAGTGGTGAAAAGCAAAATGTGATGCTTGACTCTTTATTGGAAGGCTTTTCGTGTCCTAAGTGTGACCAAAGTGCTGATGTGGGTGATGCTGGGCATTATTTAGTCATAAGAGCTGCTGACACAAGAGGCCTGAACACCGGTGGTTGCAACTTTATTCACATACAGTCGTTGTTCTTCAATCTTCTTAATGATGAGTCCTCAGAAGAGGTCCAAATTGCCTGCATTGAGGTACTTCATCGAGTCATTGTACACGTTGGGAGGGATGTTCTGCTGAAAACTAGATCTGAGTGGATCAAATGTATTGAAGTGTTACTCCTTCACAGAAAGAGGTCTTTGAGGGAAGCATTCTGCACCCAGATTAGGTTTTTCTTGAAAGAATCTATCTTGAGTTTCTTATTTCCAGAGAGTGAGATATTGAATGCAAGTAAAGAGCACATGTTCCTTGACAAGATAAAAGTAGCTCTTGCAGCAACTGAAGATCCCCAAATTATCGTGACTTTGTTGGAGTCTGCAGCAGAGATTATGATGGCCGTTGATATAAAGTATCCGCTTTTCCTATCGTCTCTTATTCTACTAGTTGATAGGCTTGATGATCCTCATCTGACAGTGACAGTAACTGCTGCAAGGTTAATTAATAGGTCTTGCTATTTCCATCTGAGAGGAGGGATTCGGCTAGTCCTTTCTAAGGTTACGAATATTCGAAACGAGCTATTTGAGTATCTCTGCCCAAAAGTTTTAAGTCATCCTAAATTGGTGAGGGAGTTTGCAGAAGCTGTTCTTGGCATTGAAACAAAAGAACTTGTTCTTGAAATGATACCAGTTGTCCTGCCAAAGCTTGTTGTCTCTCAGAAGCATGATGATCAATCAGTTGCTATTTTGGAAGAGTTGGCCAGGTGGTTGGAAATAGACATGGTGAAGCTGATTGTTGATTGGGTACCAAAAGTTCTCGCTTATACTCTTCGTCGAGCTGATGAAAAAGAGTTGTTTTCAGCTCTGCAGTTTTACCTTACGAGCACAGGATCTGACAAGCAAGAGATATTTGCTGCTGCATTACCTGCATTGTTAGAAGACTTAGTGTGCTTCGTGGATGGAAATGATCAAGATGAGATAAGTCAAAGGTTGGAAAGAGTACCTCAGATGATAGAAGAAGTTGCCAAAATTCTGATAGGAAGTGAAGATCTTCCTGGCCTTTTGAATCGTCATTTTGTTCGACTTCTTGACAGCATTGATCGGAAGATGCTTCATGCAGAGGATGTTTCTTTGCAGAAGCAAGCAATTCAACGAATCAAAATGTTGATAAATATGATGGGACAGCACCTTAGCACCTATGTGCCCAAACTGATGGTGCTTCTCATGCATGCAGTTGACAAGGAGGCACTGCGCAGTGAGGGTCTCTCTGTGCTACATTTATTCATCAAAGAGCTGGCAAAGTCATCACCATCTAGTGCTAAGCATGTAATATTTCAAATTTTTGCTGCTCTTATTCCATTTTTAGAGAAGGAACAAGATCAACCTTCATTGCATTTGGATAAGATTGTTAATATCTTAGAAGAGCTTGTTTATGAGAACAAGACAATACTGAAGCAGCATATCCGTGAGTTTCCTCTATTGCCCAGCACTCCAGCATTGGTAAAGGTGAACCAAGTAATACAAGAAGCAAGGGGGTCCATGACATTTAAGGATCAATTGCGAGATGCTGCTGATGGCTTGAATCATGAGAACTTGAATGTGAGGTACATGGTCGCTTGTGAGCTCAGCAAACTACTGAACCTCAGAAAGGAGGATTTGGCAGCAGTGATTAACAATGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_260171.p1 GENE.S_Transcript_260171~~S_Transcript_260171.p1 ORF type:3prime_partial len:1308 (+),score=274.15,UME|PF08064.9|5.8e+02,UME|PF08064.9|8.7e-15 S_Transcript_260171:134-4054(+)
MASLSSLVHELRERIAVSSSTPKEDDVALETRFRSVLPNLLNAYVIASPSANEREVIAVLKLLNHTAKIFPGVLYHGNSNAVLPLIGRILPFFAEPSFRGQHAVIFEAVGALLALLRSGDRNAYRQFFIDSMLAVEDLVLVASLYFSKSSTEKCVKVSLRCFSDSFTEISNAEALLSDLPECNKPGDGYGILVDVSLKERWLSFSIWMIHLLNKCLTEGTLYVEGLVTSSFLLSICSMLCYQDADLHMACFGFTCTIGTAMNDEVVVYEKFILTIAIILSEADGNLPVYRDMAFDSTIGSCLHALHSRCPSAIVKSTAVELVSVFNNSLTKTKSSELQVALCSAYVRISRTCPPNVWKPASLISMIDSPDICFMLKDCFEVAVGVLGPDCVGGGSISDISLGQSAAYDNNSGSLKAGCKRPSGNLGTSKIKRLKVDGEMGCSSDGWGACSSSHLWSETNKNYASDMWMSLVSYVDLLKPPCGYTNFIREEVALAALSMLCTVFCKYPNTNLSLSIFQKIHLWIPWICKQANQANSVMFDLTSYLEALHNIHLLPSSFPGNLRNSWSDSDNTNLIYSMLKLPWTHFLEVNKTHQTWRTKCLSIQVLSKIGPKSESQLDVLDMGLYDEVEEVRLEAVISMPLIVLSSGFHAFLPVFRRLDLLQKEVCENVKRRIPFALGYLSCLYGFFHEYDADVTNAYDYTISIYSGEKQNVMLDSLLEGFSCPKCDQSADVGDAGHYLVIRAADTRGLNTGGCNFIHIQSLFFNLLNDESSEEVQIACIEVLHRVIVHVGRDVLLKTRSEWIKCIEVLLLHRKRSLREAFCTQIRFFLKESILSFLFPESEILNASKEHMFLDKIKVALAATEDPQIIVTLLESAAEIMMAVDIKYPLFLSSLILLVDRLDDPHLTVTVTAARLINRSCYFHLRGGIRLVLSKVTNIRNELFEYLCPKVLSHPKLVREFAEAVLGIETKELVLEMIPVVLPKLVVSQKHDDQSVAILEELARWLEIDMVKLIVDWVPKVLAYTLRRADEKELFSALQFYLTSTGSDKQEIFAAALPALLEDLVCFVDGNDQDEISQRLERVPQMIEEVAKILIGSEDLPGLLNRHFVRLLDSIDRKMLHAEDVSLQKQAIQRIKMLINMMGQHLSTYVPKLMVLLMHAVDKEALRSEGLSVLHLFIKELAKSSPSSAKHVIFQIFAALIPFLEKEQDQPSLHLDKIVNILEELVYENKTILKQHIREFPLLPSTPALVKVNQVIQEARGSMTFKDQLRDAADGLNHENLNVRYMVACELSKLLNLRKEDLAAVINNE

Click here to download the sequence:
Link to NCBI Protein BLAST