Transcript Information: S_Transcript_260200.p1


Annotated TAIR IDAT1G02420.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:493683-495158 | Forward length=491
E-Value5.3E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.66950946503599
Replicate 20.55503873100666
Replicate 30.17398807626038
Condition 2: 8 Hour
Replicate 10.73767073424045
Replicate 20.98492415395023
Replicate 31.2065574116027
Condition 3: 24 Hour
Replicate 10.41216761303008
Replicate 20.85523817269235
Replicate 30.71383144542781


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_260200.p1 GENE.S_Transcript_260200~~S_Transcript_260200.p1 ORF type:complete len:318 (+),score=73.82,PPR_2|PF13041.2|49,PPR_2|PF13041.2|4.3e-08,PPR_2|PF13041.2|6e-15,PPR_2|PF13041.2|7.5e-13,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|0.00041,PPR_2|PF13041.2|0.00025,PPR_2|PF13041.2|0.0014,PPR|PF01535.16|0.13,PPR|PF01535.16|3.5e-09,PPR|PF01535.16|7e-08,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.33,PPR|PF01535.16|0.0019,PPR|PF01535.16|0.035,PPR_1|PF12854.3|21,PPR_1|PF12854.3|54,PPR_1|PF12854.3|4.1e-13,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|8.7e-07,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|7.7,PPR_1|PF12854.3|19,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|2e-06,PPR_3|PF13812.2|0.79,PPR_3|PF13812.2|21,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|2e+03,ECSIT|PF06239.7|0.025,ECSIT|PF06239.7|0.58,ECSIT|PF06239.7|41 S_Transcript_260200:653-1606(+)
ATGGCTGATGCAAGGAATGTCTATCATAGTTTGAAGGGTCAGTTTAGGCCAAAGTTGCGAACTTTTAATATATTGTTATCTGGGTGGAAGTCATGTGAAGAAGCTGAAGGGTTTTTTGAGGAGATGAAGGAGATGGGTGTGAAGCCTGATGTTGTTTCTTATAATAGTTTGATTGATGTGTATTGCAAGAATAAGGACTTGGTGAAGGCATACCAAGTGTTCGATAAAATGCTTGAAAGAGAGGAGGGGTTTGTGCCTCCTGATGTGATTACGTTTACGAGCTTAATTGGGGGACTGGGTTTGGCAGGTCAGCCTGATAAAGCTAGGGATTTGTTGAGGGAGATGAAGGAGTATGGGTGTCAACCAGATGTTGCGGCTTATAATGCCGCAATTAGGAATTTCTGCATTGCTAAGAGGCTTGGTGATGCTAATGAGTTGATGGATGAGATGGTCGCAAAGGGGATGAGTCCAAACCCCACTAGTTATAACCTCTTCTTTAGGCTGTTTTATTGGTCCAATGACTTGAATAGTGCTTGGAGCTTGTACCTGAGGATGAAAGCAGCGGGATGTTTGCCTAACACTCAGTCTTGTATGTTTCTGATTAGGTTGTTTAGGAGGCATGAGAAGGTGGAGATGGCACTTGAGTTATGGAATGATATGGTGGACAAGGGATTTGGGTCGTATATTTTGGTATCGGATGTGTTGTTTGATTTGCTTTGCGACTTGGGGAAGTTGTCGGAGGCACAGGAATGCTTCTTGCAGATGGTAGGGAAGGGCCAGAAACCAAGCAATGTTTCTTTTAGGAGAATTAAAGTGCTCATGGAATTGGCTAATAGGCATGAAGCTCTCAAGAACTTGTCAGAGAAGATGGCTATTTTTGGACCACCCCTCAACGTTCGCAGACCAAATGAGGATTTCGATGATGATACATCTCTAAGAACAGTTGCACGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_260200.p1 GENE.S_Transcript_260200~~S_Transcript_260200.p1 ORF type:complete len:318 (+),score=73.82,PPR_2|PF13041.2|49,PPR_2|PF13041.2|4.3e-08,PPR_2|PF13041.2|6e-15,PPR_2|PF13041.2|7.5e-13,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|0.00041,PPR_2|PF13041.2|0.00025,PPR_2|PF13041.2|0.0014,PPR|PF01535.16|0.13,PPR|PF01535.16|3.5e-09,PPR|PF01535.16|7e-08,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.33,PPR|PF01535.16|0.0019,PPR|PF01535.16|0.035,PPR_1|PF12854.3|21,PPR_1|PF12854.3|54,PPR_1|PF12854.3|4.1e-13,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|8.7e-07,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|7.7,PPR_1|PF12854.3|19,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|2e-06,PPR_3|PF13812.2|0.79,PPR_3|PF13812.2|21,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|2e+03,ECSIT|PF06239.7|0.025,ECSIT|PF06239.7|0.58,ECSIT|PF06239.7|41 S_Transcript_260200:653-1606(+)
MADARNVYHSLKGQFRPKLRTFNILLSGWKSCEEAEGFFEEMKEMGVKPDVVSYNSLIDVYCKNKDLVKAYQVFDKMLEREEGFVPPDVITFTSLIGGLGLAGQPDKARDLLREMKEYGCQPDVAAYNAAIRNFCIAKRLGDANELMDEMVAKGMSPNPTSYNLFFRLFYWSNDLNSAWSLYLRMKAAGCLPNTQSCMFLIRLFRRHEKVEMALELWNDMVDKGFGSYILVSDVLFDLLCDLGKLSEAQECFLQMVGKGQKPSNVSFRRIKVLMELANRHEALKNLSEKMAIFGPPLNVRRPNEDFDDDTSLRTVAR*

Click here to download the sequence:
Link to NCBI Protein BLAST