Transcript Information: S_Transcript_260211.p1


Annotated TAIR IDAT4G02750.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:1221116-1223461 | Reverse length=781
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46621316032433
Replicate 20.38650142290537
Replicate 30.37693183236556
Condition 2: 8 Hour
Replicate 11.1518823966919
Replicate 21.2084064228757
Replicate 31.5870193107358
Condition 3: 24 Hour
Replicate 10.22323238603527
Replicate 20.33085856315836
Replicate 30.33138452503072


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_260211.p1 GENE.S_Transcript_260211~~S_Transcript_260211.p1 ORF type:5prime_partial len:685 (+),score=126.21,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|3e-09,PPR|PF01535.16|0.0023,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|4.6e-07,PPR|PF01535.16|3e-09,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|0.0029,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|7.2,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|9.8e+02,PPR|PF01535.16|1.7,PPR_2|PF13041.2|0.0021,PPR_2|PF13041.2|2.2e-05,PPR_2|PF13041.2|5.7e-08,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|6.8e-06,PPR_2|PF13041.2|4.8e-05,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|8.3e-08,PPR_2|PF13041.2|4.6e-05,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|2.6e-11,PPR_2|PF13041.2|0.00026,PPR_2|PF13041.2|2.7e+03,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|0.00082,PPR_1|PF12854.3|1.3e-08,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|7.9e-06,PPR_1|PF12854.3|2.8e-08,PPR_1|PF12854.3|8.2e-05,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.024,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.00037,PPR_1|PF12854.3|3.9e+03,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|7.9e+03,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|5.1e-05,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.0077,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|4.9e+03,PPR_3|PF13812.2|7.8,DYW_deaminase|PF14432.2|6.3e-41,TPR_19|PF14559.2|6.4e+02,TPR_19|PF14559.2|70,TPR_19|PF14559.2|19,TPR_19|PF14559.2|2,TPR_19|PF14559.2|3.1e+02,TPR_19|PF14559.2|2.3e+03,TPR_19|PF14559.2|1.4e+04,TPR_19|PF14559.2|38,TPR_19|PF14559.2|5.6,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.4e+03,TPR_14|PF13428.2|16,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|48,TPR_14|PF13428.2|1.3,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|9.3e+02,TPR_14|PF13428.2|3e+03,TPR_14|PF13428.2|2.1e+03,TPR_14|PF13428.2|7.5e+02,TPR_14|PF13428.2|9.8e+02,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|8e+03 S_Transcript_260211:1-2055(+)
TGGAATTCTATGATCTCTGGGTACATTGCAAATGGAAGATTTCGTTATGCACGCCAGCTATTCGACCAAATGCCTGTGAGAGATGTGGTGTCCTGGAACTTGATGCTTAATGGGTTTGTACGTAATCATGATTTGGGAGCTGCTAGAGGGTTGTTTGATAAAATGCCTGAGAGGGATGTTGTCTCATGGAATACAATGCTGTCGGGGTATGCGAGACGTGGGTTTGTAGAAGAGGCTAGGGAATTGTTTGAGAGGATGCCTAATAAGAATTCTATTTCGTGGAACGGTTTACTGGCTGCGTATGTGCAGAACTGGAGGGTGGACGAGGCGAGAATGTTGTTTGATTCGAAGGAGGATTGGGAACTCGTGTCTTGGAATTGTCTGTTAGGTGGGTATGTGAAGAAGAATAGATTAGCTGAAGCTAGGGAACTATTTAATAAAATGCCTGAGAAAGATGAGGTTTCATGGAATACTATGATAACTGGATACGCTCAAAGTGGCGATCTTTCTGAGGCCAGGACTTTGTTTGAGGAGTCTCCAAGCCGAGATGTTTTCACATGGACTGCAATGGTATCCGGGTATGTGCAAAATGGAATGTTAGATGAAGCTCGGAGAATGTTTGACCAAATGCCGGAGAAGAATGTGGTTTCTTGGAATTCAATTATTGCAGGATATGTACAGCATAAGAGAATGGATTTGGCAAGGGAACTCTTTGAAGCAATGCCTAGACGGAATATTAGTTCTTGGAATACCATGATTACTGGCTATGCGTGGAGTGGAGAAATTGCACAGGCTAGGAGTTTGTTCAATAGGATGCCCCAACGAGATTCTATCTCATGGTCAGCGATGATTGCTGGTTATGCTCAAAGTAGTCACAGTGAGGAAGCTTTACAGCTATTTATAGAGATGCAAAGAAATAGGGAAGTGTCAAATAAGTCTGTATTTACATGTGTTCTGAGTACATGTGCTGACATTGGTGTTTTAGAATTAGGCATGCAAATGCATGGGCACGTCCTGAAAGCTGGGTATGAAAAAGGAACCTATGTGGGAAATGCTTTGCTTGCAATGTATTGTAAATGTGGAAGCATTGATGAAGCATACTCTGTCTTTGAGGCAATAACAGAGAAAGATACTGTTTCATGGAACACCATGATTGCTGGTTATGCAAGACATGGGTTTGGCCAAAAAGCTTTAGCTGTTTTTGAGTCGATGAATAAAGCTCGTCTTGAACCTGATGATTCGACCATGGTTGCTGTATTGTCAGCATGTGCTCATGCTGGTTTAGTAGACAGAGGCAGAAACTATTTTAATGCTATGTATCCTGATTACGGGTTAGTTGCAAGTCCACGGCATTACACTTGTATGATTGATCTTCTATGTCGAGCAGGTAAGTTGGATGAAGCCGAGGATTTGGTAAGCAAGATGCCATTTGCACCAGATGCTGCAACATGGGGTGCCCTCCTAGGTGCAAGCAGGGTTCATGGGAATATTGAGCTGGCAGAGAAGGCTGCAAAGATCATCTTTGACATGGAACCAGATAATTCAGGAATGTACGTTCTCCTTTCAAATTTATACGCATCTTCAGGCAGATGGGATGATGTTCGACTAATGAGATTGAAAATGAGGGACAAGGGGGTGAAAAAAATGCCAGGGTATAGTTGGCTTGAAGTGAAAAACAAGATTCACACATTTTCAGCTGGAGACACTTGTCACCCAGAAAAGGATAGGATATATGCTTTCTTAGAAGAGTTGGACTCGCGGTTGAAACAAGATGGGTATGTATCTTCTATAAAACTTGTCTTACATGATGTTGATGATGAGGAAAAACAGCATATGCTCAAGTATCACAGTGAAAGATTGGCTGTTGCTTTTGGGATTTTGACCATACCAGCTGAGAAACCAATCCGTGTTATGAAAAATTTACGGATTTGTGAAGATTGCCATACAGTTATAAAGCACATATCAAAGCTTGAAGGGCGGGTGATAATAGTAAGGGATTCCAACCGCTTTCACCATTTCAAGCAAGGATCATGCTCCTGTGGGGATTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_260211.p1 GENE.S_Transcript_260211~~S_Transcript_260211.p1 ORF type:5prime_partial len:685 (+),score=126.21,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|3e-09,PPR|PF01535.16|0.0023,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|4.6e-07,PPR|PF01535.16|3e-09,PPR|PF01535.16|6.5e-07,PPR|PF01535.16|7.1e-06,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|0.0029,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|7.2,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|9.8e+02,PPR|PF01535.16|1.7,PPR_2|PF13041.2|0.0021,PPR_2|PF13041.2|2.2e-05,PPR_2|PF13041.2|5.7e-08,PPR_2|PF13041.2|0.019,PPR_2|PF13041.2|6.8e-06,PPR_2|PF13041.2|4.8e-05,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|8.3e-08,PPR_2|PF13041.2|4.6e-05,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|2.6e-11,PPR_2|PF13041.2|0.00026,PPR_2|PF13041.2|2.7e+03,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|0.00082,PPR_1|PF12854.3|1.3e-08,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|7.9e-06,PPR_1|PF12854.3|2.8e-08,PPR_1|PF12854.3|8.2e-05,PPR_1|PF12854.3|0.0026,PPR_1|PF12854.3|0.024,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|0.00037,PPR_1|PF12854.3|3.9e+03,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|7.9e+03,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|5.1e-05,PPR_3|PF13812.2|4.9e+02,PPR_3|PF13812.2|0.05,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.0077,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|4.9e+03,PPR_3|PF13812.2|7.8,DYW_deaminase|PF14432.2|6.3e-41,TPR_19|PF14559.2|6.4e+02,TPR_19|PF14559.2|70,TPR_19|PF14559.2|19,TPR_19|PF14559.2|2,TPR_19|PF14559.2|3.1e+02,TPR_19|PF14559.2|2.3e+03,TPR_19|PF14559.2|1.4e+04,TPR_19|PF14559.2|38,TPR_19|PF14559.2|5.6,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.4e+03,TPR_14|PF13428.2|16,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|48,TPR_14|PF13428.2|1.3,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|9.3e+02,TPR_14|PF13428.2|3e+03,TPR_14|PF13428.2|2.1e+03,TPR_14|PF13428.2|7.5e+02,TPR_14|PF13428.2|9.8e+02,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|8e+03 S_Transcript_260211:1-2055(+)
WNSMISGYIANGRFRYARQLFDQMPVRDVVSWNLMLNGFVRNHDLGAARGLFDKMPERDVVSWNTMLSGYARRGFVEEARELFERMPNKNSISWNGLLAAYVQNWRVDEARMLFDSKEDWELVSWNCLLGGYVKKNRLAEARELFNKMPEKDEVSWNTMITGYAQSGDLSEARTLFEESPSRDVFTWTAMVSGYVQNGMLDEARRMFDQMPEKNVVSWNSIIAGYVQHKRMDLARELFEAMPRRNISSWNTMITGYAWSGEIAQARSLFNRMPQRDSISWSAMIAGYAQSSHSEEALQLFIEMQRNREVSNKSVFTCVLSTCADIGVLELGMQMHGHVLKAGYEKGTYVGNALLAMYCKCGSIDEAYSVFEAITEKDTVSWNTMIAGYARHGFGQKALAVFESMNKARLEPDDSTMVAVLSACAHAGLVDRGRNYFNAMYPDYGLVASPRHYTCMIDLLCRAGKLDEAEDLVSKMPFAPDAATWGALLGASRVHGNIELAEKAAKIIFDMEPDNSGMYVLLSNLYASSGRWDDVRLMRLKMRDKGVKKMPGYSWLEVKNKIHTFSAGDTCHPEKDRIYAFLEELDSRLKQDGYVSSIKLVLHDVDDEEKQHMLKYHSERLAVAFGILTIPAEKPIRVMKNLRICEDCHTVIKHISKLEGRVIIVRDSNRFHHFKQGSCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST