Transcript Information: S_Transcript_260477.p1


Annotated TAIR IDAT3G21470.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7563503-7565074 | Forward length=523
E-Value7E-118
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.49283335620705
Replicate 20.34047514749251
Replicate 30.51229822454446
Condition 2: 8 Hour
Replicate 11.8429349656782
Replicate 21.1047826488754
Replicate 31.8421102868502
Condition 3: 24 Hour
Replicate 10.067422479909241
Replicate 20
Replicate 30.46707489639104


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_260477.p1 GENE.S_Transcript_260477~~S_Transcript_260477.p1 ORF type:3prime_partial len:324 (+),score=65.55,PPR|PF01535.16|1.9e+03,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.0056,PPR|PF01535.16|0.00028,PPR|PF01535.16|8e-06,PPR|PF01535.16|7.4e-10,PPR|PF01535.16|0.00047,PPR|PF01535.16|2.1e-09,PPR|PF01535.16|0.062,PPR|PF01535.16|4.8,PPR_2|PF13041.2|4.4e+03,PPR_2|PF13041.2|8.4,PPR_2|PF13041.2|7.5e-06,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|8.5e-08,PPR_2|PF13041.2|0.0058,PPR_2|PF13041.2|4.1e-14,PPR_2|PF13041.2|1.8e+02,PPR_1|PF12854.3|4.2,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|0.00091,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.00045,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|18,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|1e+03 S_Transcript_260477:119-1087(+)
ATGTCAAAAACCTCAAATTTTTATCACCTTGTAAGGAATTTCATCTCCAAAGGGTCACCAAGAAAAGCCCTGGTTGTTTATTCCCAAAATCGTAGTCAAGGTTTAAGTGTTCTACACATAGTCCCTTTAATGCTCAAGGCCTGTGCTAGTCTTTGCATGACCCATCATGGGAAAGCCTTGCACGCAGAATCAGTCAAGTTTGGGGTTAATTCTGATGTAAAGGTTGGATCTTCATTGGTGGGCATGTATGCAAAATGTGGGTGTATGGTTGATGCACGTAAGGTGTTTGATTTAATGCCCCACAGAAATGTGGTCACTTGGAATGCACTGGTGGCAGGGTACTTGGCGAGTAAAGATACAAGAACTGCACTTTGTTTATTTGATAGTATGGAGGAGAGGACTGTGGTGACTTGGAACGAGATGATTCGCGGGTTGGCCAAGAATGGAGATATGATCATGGCTAGGGAGTTGTTTGAAAGGGTTCCTGTTGAGATGAGGACTGTTGTTACTTGGACTGTTATGGTTGATGGGTATGCTAGCAATGGGGATATGGAGGCTGCCAAGGAAGTTTTTGAGGAGATGCCTAAACGGAACTGTTTTGTTTGGTCTGTTATGATCAATGGATATTGCAAGCAAGGTGATGTTGAGAACACTAGGAACATCTTTTGTGTATGCTCTCGAAGGAACTTGGTGGTTTGGAATTCATTGATATCTGGGTTGGTTCGAAATGGGTTCTGTGAAGAAGCCATTGAAGCATACCATGAAATGCAAAAGGAAGGGTTTCAACCAGATGAAGTGACAGTAACAAGCATTCTGTCTGCTTGTTCGCAGTTGGGATTGTTGGATGTCGGTAAAGAGGTCCATGAAATGATCTTTGAGAAGGGAATAAAGCTTAACCAGTTTGTAATAAATGGTTTAGTGGACATGTATGCAAAATGTGGGGATTTGGGGACGGCTAGATCAATTTTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_260477.p1 GENE.S_Transcript_260477~~S_Transcript_260477.p1 ORF type:3prime_partial len:324 (+),score=65.55,PPR|PF01535.16|1.9e+03,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.0056,PPR|PF01535.16|0.00028,PPR|PF01535.16|8e-06,PPR|PF01535.16|7.4e-10,PPR|PF01535.16|0.00047,PPR|PF01535.16|2.1e-09,PPR|PF01535.16|0.062,PPR|PF01535.16|4.8,PPR_2|PF13041.2|4.4e+03,PPR_2|PF13041.2|8.4,PPR_2|PF13041.2|7.5e-06,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|8.5e-08,PPR_2|PF13041.2|0.0058,PPR_2|PF13041.2|4.1e-14,PPR_2|PF13041.2|1.8e+02,PPR_1|PF12854.3|4.2,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|0.00091,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.00045,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|18,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|5.2e-05,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|1.8e+03,PPR_3|PF13812.2|1e+03 S_Transcript_260477:119-1087(+)
MSKTSNFYHLVRNFISKGSPRKALVVYSQNRSQGLSVLHIVPLMLKACASLCMTHHGKALHAESVKFGVNSDVKVGSSLVGMYAKCGCMVDARKVFDLMPHRNVVTWNALVAGYLASKDTRTALCLFDSMEERTVVTWNEMIRGLAKNGDMIMARELFERVPVEMRTVVTWTVMVDGYASNGDMEAAKEVFEEMPKRNCFVWSVMINGYCKQGDVENTRNIFCVCSRRNLVVWNSLISGLVRNGFCEEAIEAYHEMQKEGFQPDEVTVTSILSACSQLGLLDVGKEVHEMIFEKGIKLNQFVINGLVDMYAKCGDLGTARSIF

Click here to download the sequence:
Link to NCBI Protein BLAST