Transcript Information: S_Transcript_261168.p1


Annotated TAIR IDAT5G60600.1
Annotated Gene Name4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Annotated Gene Symbol(s)GCPE, ISPG, CSB3, CLB4, HDS
Annotation TypeOrtholog
Chromosome Positionchr5:24359447-24363274 | Forward length=741
E-Value1.4E-288
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.078439031404
Replicate 234.412094331964
Replicate 337.905535003683
Condition 2: 8 Hour
Replicate 129.251641585448
Replicate 229.994115654147
Replicate 329.56866470868
Condition 3: 24 Hour
Replicate 142.191555945329
Replicate 239.360823202285
Replicate 341.181125599504


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_261168.p1 GENE.S_Transcript_261168~~S_Transcript_261168.p1 ORF type:internal len:452 (-),score=110.88,GcpE|PF04551.10|2.8e-112 S_Transcript_261168:2-1354(-)
AAAGATTTTGAGTTGGCATCTGTGAGAAATGTTGATTTTGTGAAGATTTCAAATCTTAAAAGGGTTAAGTCTTCAAGAACTAAGGCATCTGTGATTAAAAATTCGAACCCAGGTTCTGATATTGCTGAGCTTCAGCCTGCATCGGAGGGAAGCCGTCTATTAGTACCTCGGCAGAAGTATTGTGAGTCTCTGCATAAAACTGTGAGGAGAAAAACTTGCACTGTGATGGTGGGAAATGTGGCCATTGGCAGTGACCACCCTATCAGGATACAGACAATGACAACAACTGATACGAAAGACGTTGCTGCCACAGTTGAACAGGTCATGAGAATTGCTGACAGTGGAGCAGATATTGTTCGAATAACAGTGCAAGGAAAGAAAGAGGCAGATGCATGTTTTGAAATTAAAAACACTCTTGTCCAGAAAAACTACAATATTCCTTTAGTGGCAGATATTCATTTTGCTCCTTCTGTTGCAATGCGGGTTGCTGAATGCTTTGAGAAAATTCGAGTTAATCCTGGGAACTTTGCTGACAGAAGAGCCCAGTTTGAGAAGCTAGATTATACAGACGAGGACTATCAAAAGGAGCTTGAACACATTGAAGAGGTTTTTGCTCCATTGGTTGAGAAGTGTAAAAAATATGGTAGAGCTATGCGAATAGGGACAAATCATGGAAGTCTTTCAGATCGTATAATGAGCTATTATGGGGATTCTCCTCGCGGAATGGTTGAATCTGCATTTGAGTTCGCGAGAATATGCCGGAAGATGGACTACCATAATTTTGTCTTTTCCATGAAAGCAAGCAATCCAGTTGTGATGGTTGAAGCTTATCGGTTATTGGTAGCAGAAATGTATTTGCAAGGGTGGGATTATCCATTACACTTGGGAGTAACAGAAGCTGGTGAAGGAGAAGATGGACGAATGAAATCTGCAATCGGGATTGGGACCCTTCTTCAGGATGGTTTGGGGGATACAATTAGGGTCTCCCTCACTGAAGCACCGGAGGAGGAGATAGATCCCTGCAGAAGGCTGGCCAACCTTGGTAGCAGAGCAGCTGAACTTCAACAAGGAGTGGCACCATTTGAAGAAAAGCATAGACATTACTTTGAGTTTCAACGCAGAACTGGTGATTTACCAAGTCAGAAACAGGGTGAAGAAGTGGACTATAGAGGGGTCCTACACCGTGATGGTTCTGTTCTCATGACTGTTTCCTTGGACCAGTTGAAGACACCTGAACTCCTATACAAGTCATTAGCAGCAAAGCTTGTTGTTGGCATGCCTTTTAAGGATCTGGCTACTGTAGACTCCATTCTACTGAAGGAGCTCCCACCAGCAGATGATGCTAATGCTAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_261168.p1 GENE.S_Transcript_261168~~S_Transcript_261168.p1 ORF type:internal len:452 (-),score=110.88,GcpE|PF04551.10|2.8e-112 S_Transcript_261168:2-1354(-)
KDFELASVRNVDFVKISNLKRVKSSRTKASVIKNSNPGSDIAELQPASEGSRLLVPRQKYCESLHKTVRRKTCTVMVGNVAIGSDHPIRIQTMTTTDTKDVAATVEQVMRIADSGADIVRITVQGKKEADACFEIKNTLVQKNYNIPLVADIHFAPSVAMRVAECFEKIRVNPGNFADRRAQFEKLDYTDEDYQKELEHIEEVFAPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKMDYHNFVFSMKASNPVVMVEAYRLLVAEMYLQGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEAPEEEIDPCRRLANLGSRAAELQQGVAPFEEKHRHYFEFQRRTGDLPSQKQGEEVDYRGVLHRDGSVLMTVSLDQLKTPELLYKSLAAKLVVGMPFKDLATVDSILLKELPPADDANAR

Click here to download the sequence:
Link to NCBI Protein BLAST