Transcript Information: S_Transcript_262219.p3


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.43988431793687
Replicate 20.091168551890557
Replicate 30
Condition 2: 8 Hour
Replicate 10.61685013314021
Replicate 20.64711958875242
Replicate 30.5284920893797
Condition 3: 24 Hour
Replicate 10.090268113597497
Replicate 20
Replicate 31.0422332398808


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_262219.p3 GENE.S_Transcript_262219~~S_Transcript_262219.p3 ORF type:complete len:242 (+),score=27.98,UBN2_3|PF14244.2|1.8e-15,UBN2|PF14223.2|3.1e-10,Retrotrans_gag|PF03732.13|5.1e+02,Retrotrans_gag|PF03732.13|2e-06,UBN2_2|PF14227.2|1e+04,UBN2_2|PF14227.2|1e-06 S_Transcript_262219:386-1111(+)
ATGGTTGAAAAACCTCACCCTACCTTCTCTGTTTCCAATATTAAAGCCTTCATTCCCCTTCAATTGGATATATCTGACACAAACTATGAAACATGGAAAGAACTCTTCGAGACGCACGCAACCAGTTTCGATGTTCTGGGCCATATTGACGGTACTTCAACTCCGACAGAGGCCACCGCTGCTGCATGGAAACGACTTGATTCCTTAGTCAAGTCATGGATTTACGGTACCATCTCGCTGACTCTCTTCACCATGGTCGTCACTGGCCAAAAACCAACAGCCCATACCATCTGGACAAATGTTCAGAACTTGTTTCGTGACAACAAAGAGTCACGGTCAGTCTGTTTGGAGCACGAATTCCGTACACTTGGGTTGGGTGATCACTCCGTCGCTACGTACTGTCATCGCCTCAAGTCCCTGGCTGATCTTCTAGCAGGGGTTGATTCTCCTGTATCAGACAAAACGTTGGTGATTCAAATGCTCAATGGCCTTCCCCACAAGTATGGTAATGTTATCAATGCTCATCCTCAGCCGGGCCTCCTTGGTCCTGCTCCTCGGCCTTCTCCTCCTATAGCGAATTTTGCATCTGCTCCTACTTTTGCCGCCTCTGTTCCGAACTATCAGCCCACTGCTGACCTACTAGGTGCCTTCAATACCATGACTTTACACAGCCCCAAGAACAAGATGCTTCTTGGTACATGGATTCAGGTGCGACGGCTCATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_262219.p3 GENE.S_Transcript_262219~~S_Transcript_262219.p3 ORF type:complete len:242 (+),score=27.98,UBN2_3|PF14244.2|1.8e-15,UBN2|PF14223.2|3.1e-10,Retrotrans_gag|PF03732.13|5.1e+02,Retrotrans_gag|PF03732.13|2e-06,UBN2_2|PF14227.2|1e+04,UBN2_2|PF14227.2|1e-06 S_Transcript_262219:386-1111(+)
MVEKPHPTFSVSNIKAFIPLQLDISDTNYETWKELFETHATSFDVLGHIDGTSTPTEATAAAWKRLDSLVKSWIYGTISLTLFTMVVTGQKPTAHTIWTNVQNLFRDNKESRSVCLEHEFRTLGLGDHSVATYCHRLKSLADLLAGVDSPVSDKTLVIQMLNGLPHKYGNVINAHPQPGLLGPAPRPSPPIANFASAPTFAASVPNYQPTADLLGAFNTMTLHSPKNKMLLGTWIQVRRLI*

Click here to download the sequence:
Link to NCBI Protein BLAST