Transcript Information: S_Transcript_26264.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value9E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5900731129129
Replicate 22.6840376590651
Replicate 33.0064800914872
Condition 2: 8 Hour
Replicate 11.971690588932
Replicate 22.2317415917976
Replicate 33.4229828270773
Condition 3: 24 Hour
Replicate 11.7008181793163
Replicate 21.6542928157918
Replicate 32.88427271786


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_26264.p1 GENE.S_Transcript_26264~~S_Transcript_26264.p1 ORF type:complete len:411 (+),score=49.97,DDE_Tnp_4|PF13359.2|3.8e-33,Plant_tran|PF04827.10|7.1e+03,Plant_tran|PF04827.10|3.4e-10,DDE_Tnp_1|PF01609.17|3e-07 S_Transcript_26264:1639-2871(+)
ATGGATAATAGGGATACTCAACTTAAGTTGCTTCTCTTAATGCAACAATACTTGGATGATGAGAATGACTTTTTGGATATGATGGGTTGTGCCTTAAGTCACATGGCTTTATATTATGTGAATCATATATATAAGGAACCTTGCATGACTTCTTATCAAACAGGAGAAAAATGGATGAATGAAATTTTGAATGGTCATGAAAGAAGGTGCTTTAACATGTTTAGAATAAATCAAGATACAATACATCATTTATGTACAGATTTGGAAGGCAAATATGGTTTAAAACCTTCAAATAAAATTTCCATATTGGAGAAAGTGGGTCTGTTTGTTTATGTTCTTAGTAAAGGAGCTTCCAATAGATATTCTCAAGAGCGTTTTCAACACTCTGGTGAAACGGTGAGTAGAGTTTTTAAAGAAGTTCTAACTGCTATGGATGGCCTCTCAAGAGATATACTTGTGCCAAGAGATCCCGAATTCAAGGAGATTCCACCACAAATTGCAAATGATACTAGATATATGCCACATTTTAAGGATTGCATTGGAGCTATTGACGGTACTCATATATCATTGATTGTCCCGGAGGAGGATCAAATTCGATATAGAGGAAGAAAAATGATACCAACTACCAACGTTTTAGCAGCATGTGACTTTGATTTGCTATTCACATATGTTTTAACGGGATGGGAAGGATCAGCACATGATACACGCATTTTCCTGGACACAATCAACAATCCAAGTCTCAAATTTTCAAAACTGTCGGCTGGCAAATACTATTTGGTAGATAAAGGGTACCCAGAAAGACAAGGATATTTAACACCTTATCCCAAAATAAGATATCATCAATCTGAGTTTCGTAATACAAATCCAAGAGGGTCTCGAGAAATCTTCAATCGGGCACATTCATCCCTAAGAAGCTGTATTGAGAGGGCATTTGGTGTTTTAAAGGCTCGTTGGAAGATATTAGCAAAAATGCCAATATATTCACTAAAGGATCAAAATAGAATAATTTACTCATGTTTTGCATTGCACAATTATATTAGAAGACATGCAATTGGTGACTTAGCTTTCAAGCTTATTGACGAAGATCCTGAATTCATACCTCCTGACATCATTCAAGATGTTGAAGGTTATACTGATCAATATGAGGAGAATGAAAGTATTGAAGGAACAAGAACTGAAGAAATGACCATGGTTCGTGACAATATTGCTTCAAGTTTAATGGAAGGTAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_26264.p1 GENE.S_Transcript_26264~~S_Transcript_26264.p1 ORF type:complete len:411 (+),score=49.97,DDE_Tnp_4|PF13359.2|3.8e-33,Plant_tran|PF04827.10|7.1e+03,Plant_tran|PF04827.10|3.4e-10,DDE_Tnp_1|PF01609.17|3e-07 S_Transcript_26264:1639-2871(+)
MDNRDTQLKLLLLMQQYLDDENDFLDMMGCALSHMALYYVNHIYKEPCMTSYQTGEKWMNEILNGHERRCFNMFRINQDTIHHLCTDLEGKYGLKPSNKISILEKVGLFVYVLSKGASNRYSQERFQHSGETVSRVFKEVLTAMDGLSRDILVPRDPEFKEIPPQIANDTRYMPHFKDCIGAIDGTHISLIVPEEDQIRYRGRKMIPTTNVLAACDFDLLFTYVLTGWEGSAHDTRIFLDTINNPSLKFSKLSAGKYYLVDKGYPERQGYLTPYPKIRYHQSEFRNTNPRGSREIFNRAHSSLRSCIERAFGVLKARWKILAKMPIYSLKDQNRIIYSCFALHNYIRRHAIGDLAFKLIDEDPEFIPPDIIQDVEGYTDQYEENESIEGTRTEEMTMVRDNIASSLMEGR*

Click here to download the sequence:
Link to NCBI Protein BLAST