Transcript Information: S_Transcript_26357.p1


Annotated TAIR IDAT1G19720.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6819926-6822610 | Reverse length=894
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.701996312014
Replicate 222.5851329405
Replicate 326.239834202372
Condition 2: 8 Hour
Replicate 128.489952114772
Replicate 230.341977354669
Replicate 330.183432459816
Condition 3: 24 Hour
Replicate 127.065983039643
Replicate 227.748477307681
Replicate 326.814416994391


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_26357.p1 GENE.S_Transcript_26357~~S_Transcript_26357.p1 ORF type:complete len:887 (+),score=159.36,PPR_2|PF13041.2|0.0086,PPR_2|PF13041.2|0.04,PPR_2|PF13041.2|0.00027,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|3.6e-09,PPR_2|PF13041.2|5.4e-12,PPR_2|PF13041.2|4.1e-11,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|6.8e-11,PPR_2|PF13041.2|8.2e-10,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|0.72,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|4.7,PPR|PF01535.16|9.7e+02,PPR|PF01535.16|0.00044,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.001,PPR|PF01535.16|4.4e-08,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.033,PPR|PF01535.16|4.6e-07,PPR|PF01535.16|7.7e-08,PPR|PF01535.16|2e-05,PPR|PF01535.16|2.6,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|0.17,PPR|PF01535.16|0.0013,PPR_1|PF12854.3|3.9e+02,PPR_1|PF12854.3|0.0072,PPR_1|PF12854.3|14,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|3e-08,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|6.8e-05,PPR_1|PF12854.3|2.9e-06,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|1.6e+04,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|5e+03,PPR_3|PF13812.2|1,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|8.8e+02,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|31,PPR_3|PF13812.2|1.8,DYW_deaminase|PF14432.2|2.9e+03,DYW_deaminase|PF14432.2|5.8e-20,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|5.1e+03,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|77,TPR_19|PF14559.2|9.4,TPR_19|PF14559.2|1.5,TPR_19|PF14559.2|3.3e+02,TPR_19|PF14559.2|1.1e+04,TPR_19|PF14559.2|4.7e+03,TPR_19|PF14559.2|1.2e+04 S_Transcript_26357:840-3500(+)
ATGGAGAGCCTAATCATCCCAATTAAGTCTACTCCTCCTCTGTCACTCCCTTCTGATTTCTCTCCAAAACCCCTCAAACCAAATTTTTCTCTTTCTAAAACCCACCAATCATTTCGCCAAAAGACCCCTGATTTTGTTCATATAAATCATCTTCTTAGGATTGGTCGTTTTGGGGAAGCCATAACTGCCCTTGACTTACTTGCCCGTAATGGGTGTAAGCTAAATTCTGATACTTTTACTCAGTTACTAGATTCTTGCATTGATATTAACTCAGTTCAGTTAGGCCGCGAGCTTCATGCTAGAATTCACTTGGTTGATGAAGTTAATCCCTTTGTTGAGACTAAGTTAGTTAGTATGTATGCCAAATGTGGGTGTTTGGATGATGCACGGAAGGTGTTCGATGAAATGTCTGACAGAAATTTGTTTACTTGGTCTGCAATGATTGGGGCATACTCTAGGGAGCAGAGGTGGAGTGAGGTTGTAGGGTTGTTTGGTTTGATGATGCAAGAGGGTATTTTGCCTGATGGGTTTTTGTTTCCAAAGATTTTACAAGCTTGTGGGAATTGTGGGGATTATGAGACAGGAAGGTTGTTGCATTCTTTGGTGGTTAGAAGTGGGATGGGTTCGCGTAAACGGGTTAATAATGCAATGTTGGCAGTGTATGCTAAGTGTGGTAAGTTGAGTTTAGCTAGGAGATTTTTTGAGGAGATGGATGAGAGGGATATGGTGAGTTGGAACTCAATGATATTTGGGTATTGTCAAAAAGGCAAGAATAATGAAGCACATCGGATGTTCGATATGATGTGTGACGAAGGGATTGAGCCGGGGTTAATAACTTGGAACATATTGATTTCAGGTTATAACCAGTCAGGTGATTGTGATGCTGCTATGGAAGTCATGAACAAGATGGAGAGTTTTGGAGTGATTCCTGATGTGTTTACCTGGACTTCAATGATCTCAGGCCTTGTGCAGAACAATAGGATAGTTGAAGCATTAGAACTCTTTAAGCAGATGCTTGTGGTTGGTGTTCAACCAAATGGAGTTACTGTAGCCAGTGCAGTCTCTGGATGTGCATCTGTTAAATTTCTGGAGAAGGGTGAAGAGTATCATTCATTGGCTGTCAAAATTGGTCTCTCTGACAATGTTTTGGTAGGGAATGCATTGGTTGACATGTATTCCAAGTGTGGGGAACTTGAAGCTGCTCGCAAGGTCTTTGACCTTGTATCTGAGAAGGATGTTTATACATGGAACTCAATGATAGGAGGGTACTGTCAAGGTGGCTATTGTGGCAAAGCCCATGATCTCTTTATGAAAATGCAAAACACAGAGATACAGCCTAATGTTGTGACATGGAATGTGATGATCTCAGGTTACATACAAAATGGGGATGATGAGCAAGCCATGCATCTCTTTCAGATGATGAGAAAAGGGGGGATAGTAAAGCCAGACACATCATCATGGAACTCTCTTATATCTGTTTATCTGCAAATGGGGCACAAGAACAAGGCATTGGGGGTCTTTCGTCAAATGCAATCCTCAAGTTTTCGGCCCAATCAGGTTACAATTTTGACTATCTTACCTCCTTGTGCTAATTTAATTGCGGCAAACAAGGTTAAAGAGATTCATGCTTCTGTACTTCGTGGCAATTTGCATTCTGAGATAGCTATTCTTAATTCTCTGGTTGACACTTATGCCAAGTCGGGGAATATTGCATATGCGAGGTCTGTATTTGACTGGATGTCATCAAAGGATATTATCACTTGGAACTCGATGATAGCTGGTTATGTTTTACATGGCTGTTCAGATGATGCACTTGATGCCTTTGATCAGATGGTGAGCGAGAAATACAGACCAAATAGAGTTGCCTTTGTGAGTCTCATACTTGCGTGCAGCCGAGCAAAACTGGTTGAGAAGGGGAAGCAAATCTTCTATAGCATGACCAAAGATTACCAAATAATACCTGGATCTGAACATTATTCTGCAATGGTAGATTTATTTGGCCGTTCAGGTAGGCTAAAAGAGGCAATTGAATTTATTGAATGCATGGAAGTGGAACCTGACTCAGCTGTCTGGGAAGCATTGCTCACTGCTAGTCGCTGTCATGGCAATGTTCCTTTGGTTATTCATGCAGGTGAACAATTGCTTAGATTAAATCCTAATCATAGTCTGGCTAACCTTTTAGTCTCATGGGCGTACTCGGTGTGTGGAAGGTCTTTCAAGTCTCTGAAGGAGAGGAGTCCACCAGGGAGTAAAGATACCAAGAAAGCTTGTGGATGCAGCTTGCTTGAATTAAGAAACAAGGTGTATTCATTTGTTAGTGGTGACCACTCCACTCCAGGTTTTGACTCTCTTTATACCTGGCTGGAGAGACTAGATGGAAAAATAAAGCTGTCTGATACAAACAATATGCATTCTGTGCACGATGAAGATGAAAAAATTTGTGGTATCCACAGTGAGAAACTTGCCCTGGCTTTTTCTCTTGCCAGCACTCACTTCAGAATAAAATGCATAAGGATTGTGAAGAACTCCCGAATTTGTGATGAATGCCATGTGATCGCTAAATATATTTCTTCATCATATTGCTGCGACATATTATTGAGTGATACAAAATGCTTGCACCACTTCAAAAATGGCCATTGTTCCTGTGGGGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_26357.p1 GENE.S_Transcript_26357~~S_Transcript_26357.p1 ORF type:complete len:887 (+),score=159.36,PPR_2|PF13041.2|0.0086,PPR_2|PF13041.2|0.04,PPR_2|PF13041.2|0.00027,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|3.6e-09,PPR_2|PF13041.2|5.4e-12,PPR_2|PF13041.2|4.1e-11,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|6.8e-11,PPR_2|PF13041.2|8.2e-10,PPR_2|PF13041.2|6.3e-09,PPR_2|PF13041.2|0.72,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|4.7,PPR|PF01535.16|9.7e+02,PPR|PF01535.16|0.00044,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.001,PPR|PF01535.16|4.4e-08,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.033,PPR|PF01535.16|4.6e-07,PPR|PF01535.16|7.7e-08,PPR|PF01535.16|2e-05,PPR|PF01535.16|2.6,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|0.17,PPR|PF01535.16|0.0013,PPR_1|PF12854.3|3.9e+02,PPR_1|PF12854.3|0.0072,PPR_1|PF12854.3|14,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|7e-08,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|3e-08,PPR_1|PF12854.3|4.7e+03,PPR_1|PF12854.3|2.9,PPR_1|PF12854.3|6.8e-05,PPR_1|PF12854.3|2.9e-06,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|0.0021,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|0.01,PPR_1|PF12854.3|1.6e+04,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|5e+03,PPR_3|PF13812.2|1,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|8.8e+02,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|0.59,PPR_3|PF13812.2|0.45,PPR_3|PF13812.2|31,PPR_3|PF13812.2|1.8,DYW_deaminase|PF14432.2|2.9e+03,DYW_deaminase|PF14432.2|5.8e-20,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|5.1e+03,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|77,TPR_19|PF14559.2|9.4,TPR_19|PF14559.2|1.5,TPR_19|PF14559.2|3.3e+02,TPR_19|PF14559.2|1.1e+04,TPR_19|PF14559.2|4.7e+03,TPR_19|PF14559.2|1.2e+04 S_Transcript_26357:840-3500(+)
MESLIIPIKSTPPLSLPSDFSPKPLKPNFSLSKTHQSFRQKTPDFVHINHLLRIGRFGEAITALDLLARNGCKLNSDTFTQLLDSCIDINSVQLGRELHARIHLVDEVNPFVETKLVSMYAKCGCLDDARKVFDEMSDRNLFTWSAMIGAYSREQRWSEVVGLFGLMMQEGILPDGFLFPKILQACGNCGDYETGRLLHSLVVRSGMGSRKRVNNAMLAVYAKCGKLSLARRFFEEMDERDMVSWNSMIFGYCQKGKNNEAHRMFDMMCDEGIEPGLITWNILISGYNQSGDCDAAMEVMNKMESFGVIPDVFTWTSMISGLVQNNRIVEALELFKQMLVVGVQPNGVTVASAVSGCASVKFLEKGEEYHSLAVKIGLSDNVLVGNALVDMYSKCGELEAARKVFDLVSEKDVYTWNSMIGGYCQGGYCGKAHDLFMKMQNTEIQPNVVTWNVMISGYIQNGDDEQAMHLFQMMRKGGIVKPDTSSWNSLISVYLQMGHKNKALGVFRQMQSSSFRPNQVTILTILPPCANLIAANKVKEIHASVLRGNLHSEIAILNSLVDTYAKSGNIAYARSVFDWMSSKDIITWNSMIAGYVLHGCSDDALDAFDQMVSEKYRPNRVAFVSLILACSRAKLVEKGKQIFYSMTKDYQIIPGSEHYSAMVDLFGRSGRLKEAIEFIECMEVEPDSAVWEALLTASRCHGNVPLVIHAGEQLLRLNPNHSLANLLVSWAYSVCGRSFKSLKERSPPGSKDTKKACGCSLLELRNKVYSFVSGDHSTPGFDSLYTWLERLDGKIKLSDTNNMHSVHDEDEKICGIHSEKLALAFSLASTHFRIKCIRIVKNSRICDECHVIAKYISSSYCCDILLSDTKCLHHFKNGHCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST