Transcript Information: S_Transcript_267100.p1


Annotated TAIR IDAT1G20230.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7009570-7011852 | Forward length=760
E-Value7.8E-183
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.52773656840301
Replicate 20.31250410138123
Replicate 30.99266851441476
Condition 2: 8 Hour
Replicate 12.7185341764051
Replicate 22.9153117207576
Replicate 32.8380873581703
Condition 3: 24 Hour
Replicate 10.74260227163493
Replicate 20.25681372891045
Replicate 30.78595605794979


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_267100.p1 GENE.S_Transcript_267100~~S_Transcript_267100.p1 ORF type:5prime_partial len:353 (+),score=62.67,DYW_deaminase|PF14432.2|1.3e-43,PPR_2|PF13041.2|6.6,PPR_2|PF13041.2|1.2e-14,PPR_2|PF13041.2|0.00041,PPR_2|PF13041.2|0.091,PPR_2|PF13041.2|2.9e+02,PPR_2|PF13041.2|8.4e+02,PPR|PF01535.16|0.064,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.048,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.7,PPR|PF01535.16|5.4e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|0.38,PPR_1|PF12854.3|2.1e+03,PPR_3|PF13812.2|34,PPR_3|PF13812.2|0.0066,PPR_3|PF13812.2|0.41,PPR_3|PF13812.2|8,PPR_3|PF13812.2|65,PPR_3|PF13812.2|6.3e+02 S_Transcript_267100:3-1061(+)
GCAGCACATTGTTTCTCTATACGAAGGGGAATAGTGCATGATGTCTTTGTTGGAAGTGCTCTCATTGACATGTATGCAAAATGTGGGAAAATCAGGGATTCCAAGCTGTGTTTTGACACAATGCCTACCAGAAACTTGGTAACATGGAATGTGATAATTGGAGGATACGCAATGCATGGGAATGATAAGGAGGCCATGGAAATGTTTGATTGGATGCAGAGGAGTGGGCGAAAGCCAAATGCCGTCACATTTACTTGTCTTCTATCTGCTTGTAATCAGAAAGGCCTCGTTGATGAGGGCTGGCGCTATTTCAATAGCATGGCGGAAGAGCATGGTGTTCGACCTCAAATGGAGCATTATGCTTGCATGGTGAGCCTCCTAAGCCGTGTAGGAAAACTTGAAGAAGCTTACTCCTTGATCAACACAATGCCCTTTGAGCCGGATGCTTGTGTTTGGGGGGCATTGCTCAGTTCTTGCAGAGTGTACAAAAATTTGCAGCTAGGCGAGACTGCAGCAGACAGACTCTTTAAGTTGGAACCTAGAAATCCTGGTAACTATGTCCTCCTTTCCAATATCTATGCTTCTAAGGGCATGTGGGATGATGTAGATAGAGTAAGAGATTTGATGAAGGGGATCGGATTGAAGAAAAACCCCGGTTGCAGTTGGATTGAGATCAAGAACAAAGTCCACATGCTTCTAGCAGGGGACAAAGCTCACCCCCAGATGGCCCAAATTATTCAGAAATTGGAAGTTTTGGGTACGGAGATGAAGAAATCAGGTTTAGTTCCTAAACTCGATTATGTGCTACAAGATGTGGAGGAGCAGGACAAGGAACAGATCTTGTGTGGACATAGCGAGAAGTTGGCTGTCGTGTTTGGACTGCTAAATACTCCTGCAGGGTCTCCTCTTCGTGTTATTAAGAACCTTCGCATCTGTGGTGACTGCCATGTTGTTATAAAGTTTATATCTAATTTTGAAGGGCGAGAAATTTTTGTCAGAGACACCAATCGCTTCCACCATTTCAAGGATGGGGAATGTTCTTGTGGAGATTATTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_267100.p1 GENE.S_Transcript_267100~~S_Transcript_267100.p1 ORF type:5prime_partial len:353 (+),score=62.67,DYW_deaminase|PF14432.2|1.3e-43,PPR_2|PF13041.2|6.6,PPR_2|PF13041.2|1.2e-14,PPR_2|PF13041.2|0.00041,PPR_2|PF13041.2|0.091,PPR_2|PF13041.2|2.9e+02,PPR_2|PF13041.2|8.4e+02,PPR|PF01535.16|0.064,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.00045,PPR|PF01535.16|0.048,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|1.7,PPR|PF01535.16|5.4e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|0.38,PPR_1|PF12854.3|2.1e+03,PPR_3|PF13812.2|34,PPR_3|PF13812.2|0.0066,PPR_3|PF13812.2|0.41,PPR_3|PF13812.2|8,PPR_3|PF13812.2|65,PPR_3|PF13812.2|6.3e+02 S_Transcript_267100:3-1061(+)
AAHCFSIRRGIVHDVFVGSALIDMYAKCGKIRDSKLCFDTMPTRNLVTWNVIIGGYAMHGNDKEAMEMFDWMQRSGRKPNAVTFTCLLSACNQKGLVDEGWRYFNSMAEEHGVRPQMEHYACMVSLLSRVGKLEEAYSLINTMPFEPDACVWGALLSSCRVYKNLQLGETAADRLFKLEPRNPGNYVLLSNIYASKGMWDDVDRVRDLMKGIGLKKNPGCSWIEIKNKVHMLLAGDKAHPQMAQIIQKLEVLGTEMKKSGLVPKLDYVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPAGSPLRVIKNLRICGDCHVVIKFISNFEGREIFVRDTNRFHHFKDGECSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST