Transcript Information: S_Transcript_267280.p1


Annotated TAIR IDAT1G45474.1
Annotated Gene Namephotosystem I light harvesting complex gene 5
Annotated Gene Symbol(s)LHCA5
Annotation TypeHomolog
Chromosome Positionchr1:17179353-17180439 | Forward length=256
E-Value5E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6377231529342
Replicate 23.8185597311083
Replicate 30.28373440128616
Condition 2: 8 Hour
Replicate 10.57414512392281
Replicate 20.25813671507377
Replicate 30.73785626324935
Condition 3: 24 Hour
Replicate 10
Replicate 23.6610772546407
Replicate 30.970078630966


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_267280.p1 GENE.S_Transcript_267280~~S_Transcript_267280.p1 ORF type:complete len:260 (+),score=-19.98,Chloroa_b-bind|PF00504.17|7.1e-44 S_Transcript_267280:49-780(+)
ATGGCGACCGCAATGGCAAACCGCACGCTAGTCAGCGTGAGGCCCATCGTGGCCTCACGACGCTCGGTGGCCGCCGCCGCCGCCGCGGGCTCCCGCCCGCTGTGGCTGCCCGGCAGCACCGCGCCGAAGCACCTCGATGGCAGCATGCCTGGCGACTACGGCTTCGACCCGCTCAACCTCGGCGTCGACAAGAACAGCCTCGAGTGGTACAAGCAGTCCGAGATCTTCCACTGCCGGCTCGCGATGGCCGCGGTCGCGGGCATCCTCATCCCCGGGGCGCTCATCCCCGGCTTCGCGCAGTGGTTCGACGCCGGCAAGGTCGCGCTGCAGGGCAGCCCCTTCCCGTACAGCACCCTCCTCGCCATCGAGCTCTTCCTCTTTGGCTTCGTGGAGTGCAAGCGCTGGATGGACATCCGCAAGCCCGGCAGCCAGGGCGAGCCCGGGAGCTTCCTCGGCCTTGAGGGCATGCTCAAGGGCAGCGACGCGGGGCCGGGCTACCCCGGCGGGCCGTTCAACCCCGTCGGCTTTGGCAAGGACAACATGCGGGACATGCAGGTCAAGGAGATCAAGAACGGCCGCTTGGCAATGGTGGCGTTCGCGGGCTTTGTTGCACAATACGCGGCGACGGGCAAGGGCCCACTGCAATGCCTGGGCGACCACTTGGCAAACCCATGGGCAAACAACTTCACCACCAACGGCATCTCCATCCCCATCCCTGAGCTTGTGAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_267280.p1 GENE.S_Transcript_267280~~S_Transcript_267280.p1 ORF type:complete len:260 (+),score=-19.98,Chloroa_b-bind|PF00504.17|7.1e-44 S_Transcript_267280:49-780(+)
MATAMANRTLVSVRPIVASRRSVAAAAAAGSRPLWLPGSTAPKHLDGSMPGDYGFDPLNLGVDKNSLEWYKQSEIFHCRLAMAAVAGILIPGALIPGFAQWFDAGKVALQGSPFPYSTLLAIELFLFGFVECKRWMDIRKPGSQGEPGSFLGLEGMLKGSDAGPGYPGGPFNPVGFGKDNMRDMQVKEIKNGRLAMVAFAGFVAQYAATGKGPLQCLGDHLANPWANNFTTNGISIPIPELVK*

Click here to download the sequence:
Link to NCBI Protein BLAST