Transcript Information: S_Transcript_268196.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.078983880443686
Condition 2: 8 Hour
Replicate 10.091329294720056
Replicate 20.095810914945296
Replicate 30.045644213286898
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_268196.p1 GENE.S_Transcript_268196~~S_Transcript_268196.p1 ORF type:3prime_partial len:467 (-),score=51.50,rve|PF00665.22|1.7e-23,gag_pre-integrs|PF13976.2|3.7e-12,zf-CCHC|PF00098.19|2.1e-07,zf-CCHC|PF00098.19|8.7e+03 S_Transcript_268196:1-1398(-)
ATGCGTGTTAATCTTACTCACAATGATAATATTAAGACTTTTGATGATGTGTCCCACTACCTTGAACTTGAAGAGGACCGTCTTATGTCCGAACAAAATGCTACAGAGGCGCATATGGTGGAATCTAGTGGACACAAGTACAAGCGCAACAAAGGTAAAGGTGGTCCTAAATCTGGAAAGGATAGTAGGTTGGGGCCTAAGAAAGGTAATTTCACCAAGCGCAAGAGAGGAAAGCGTGGTGGCAAGAAGGACAAGTGTAAAGTGAAGTGTTATAAATGTGGCAAGTTTGGCCATTTTGCTCGTGAGTGCACTGAGCAAAAGGTACACTCTGAACTATTTGATTCCAATTTTTCTTATGTTTCTAGTAGTGTTATCTTGGTTGAATATGTCCCTATTTGGACTGTTGATTCAGGAGCCACAGACCACATAACAAGGGATCGAGCAGCTTATGTGGATTTTCGTCGAATTCCAAGCGGAAGTAGACAAATTTACATGGGGAACAATTCATGTGTTGAAGTTCTTGGAATAGGCACTTGCAAGTTAGACATGCGAGGTGGCCGCACTTTATATCTCCATGATGTTTTATATGATCCAAATGTTCGACGAAATCTAGTTTCAGTTACTGTCCTTCTAAACTTAGGTTATAAGATTGTATTTCATGATGGTTGTGTAAACTTTTACTTGGGTACTTGTTATTATGGTAGGGGATATCTAGTTGATGGATTTATGGTACTAGACACTATTAATAATTGTAATAATGACAACTCTAGTTGCTATTCTTATGTTGCTTCATCTAGTTATAATGCATGTGATGAATCCATTACTTGGCATGCTAGATTAGGGCATATTGGACAAGATAGAACGAATAGATTGGCTAAAGAAGGCCTTTTAGGCACTCTTTGCAAAGTTATCTTGTCAATTTGTGAGCCCTGCTTAGCAGGAAAAGCAACTAGAAAGCCTTTTGGTAAGGCACATAGAGCCACATTGCCTTTACAATTAAGTCATACTGATATTTGTGGCCCAATGAATGTGAGGGCAAGACATGGTGCTTCCTATTTCATCACTTTTAATGATGTCTATACTCGATTTGGTCATGTATATTTAATCTCCCATAAGTATGAAGCTTTAGATTGCTTTAGACGGTATGCCAATATGGTTGAGAATCAACTTAATTTAACAATTAAGGCACTTAGATCAGACCGAGGACGGGAATATCTATCTGACTCTTTCAAAGAGTATTGTGATGATAAAGGAATTTTGAGGCAGTTGACAATTCCTGGAACTCCACAACAAAATGGTGTTGTGGAAAGGAGGAATCGTACGCTTTTAGACATGGTTAGATCCATGATGGCGCAAGCAAATTTACCCATTTCTTATTGTGGAGATGCTTTATTGATT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_268196.p1 GENE.S_Transcript_268196~~S_Transcript_268196.p1 ORF type:3prime_partial len:467 (-),score=51.50,rve|PF00665.22|1.7e-23,gag_pre-integrs|PF13976.2|3.7e-12,zf-CCHC|PF00098.19|2.1e-07,zf-CCHC|PF00098.19|8.7e+03 S_Transcript_268196:1-1398(-)
MRVNLTHNDNIKTFDDVSHYLELEEDRLMSEQNATEAHMVESSGHKYKRNKGKGGPKSGKDSRLGPKKGNFTKRKRGKRGGKKDKCKVKCYKCGKFGHFARECTEQKVHSELFDSNFSYVSSSVILVEYVPIWTVDSGATDHITRDRAAYVDFRRIPSGSRQIYMGNNSCVEVLGIGTCKLDMRGGRTLYLHDVLYDPNVRRNLVSVTVLLNLGYKIVFHDGCVNFYLGTCYYGRGYLVDGFMVLDTINNCNNDNSSCYSYVASSSYNACDESITWHARLGHIGQDRTNRLAKEGLLGTLCKVILSICEPCLAGKATRKPFGKAHRATLPLQLSHTDICGPMNVRARHGASYFITFNDVYTRFGHVYLISHKYEALDCFRRYANMVENQLNLTIKALRSDRGREYLSDSFKEYCDDKGILRQLTIPGTPQQNGVVERRNRTLLDMVRSMMAQANLPISYCGDALLI

Click here to download the sequence:
Link to NCBI Protein BLAST