Transcript Information: S_Transcript_270140.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value4.8E-151
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.2963607089429
Replicate 26.5205815291441
Replicate 37.6906956138091
Condition 2: 8 Hour
Replicate 17.9430603610374
Replicate 27.8799628811993
Replicate 37.5943100778881
Condition 3: 24 Hour
Replicate 18.4903190894617
Replicate 28.8086069284589
Replicate 34.6972228446775


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_270140.p1 GENE.S_Transcript_270140~~S_Transcript_270140.p1 ORF type:internal len:247 (-),score=68.86,Cupin_8|PF13621.2|1.1e-09 S_Transcript_270140:2-739(-)
ATCTCTTATATTTCTGCTCATTTCCCTTGTTTTGATGTTTCAAGAATTGGGTGTCAAGGGTTTTCCATTAGGGACTTCTATTCTGATTATTTGTTCCAAAGTTGGTTGTGTGCTAATCTTGAGATGAAGCCTGAGTGGTTACAAAGGGATAATATAAAAAGAAGGAGGGGGGTTTCTGTTGAGGAATTTGTGTTGAATTTTGAGGAACCTAATAAGCCTGTTTTGTTGGAAGGGTGTTTGGATAATTGGGTTGCAATGGGGAAATGGGATAGGGATTATTTGATCAAGGAATGTGGGGATGTTAAGTTTGCTGTTGGTCCTGTGGAAATGAAGCTTGAGGACTACTTTAGGTATTCGGATTTGACAAGGGAAGAAAGGCCATTGTACTTGTTTGATCCAAAGTTTGCAGAGAAGGTTCTGAGCTTGGGTAAGGAGTATGAAGTGCCTGTGTACTTTAGGGAGGATTTGTTTTCGGTTTTGGGTGATGAGAGGCCTGATTATCGGTGGGTTATCATTGGTCCTGCTGGGTCTGGTTCGTCTTTTCACATTGATCCGAATTCAACATCGGCTTGGAATGCTGTGATTAAGGGGTCTAAGAAGTGGGTCATGTTCCCTCCAGATGTTGTACCTCCTGGAGTCCATCCTAGCCCTGATGGTGCAGAGGTTGCTTGTCCAGTTTCTATAATTGAATGGTTCATGAATTTTTATGGAGCTACAAAGGATTGGACAAAGAGACCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_270140.p1 GENE.S_Transcript_270140~~S_Transcript_270140.p1 ORF type:internal len:247 (-),score=68.86,Cupin_8|PF13621.2|1.1e-09 S_Transcript_270140:2-739(-)
ISYISAHFPCFDVSRIGCQGFSIRDFYSDYLFQSWLCANLEMKPEWLQRDNIKRRRGVSVEEFVLNFEEPNKPVLLEGCLDNWVAMGKWDRDYLIKECGDVKFAVGPVEMKLEDYFRYSDLTREERPLYLFDPKFAEKVLSLGKEYEVPVYFREDLFSVLGDERPDYRWVIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVMFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYGATKDWTKRP

Click here to download the sequence:
Link to NCBI Protein BLAST