Transcript Information: S_Transcript_27055.p1


Annotated TAIR IDAT2G39440.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:16468220-16469113 | Reverse length=162
E-Value9.6E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.953843890878
Replicate 28.5865991791409
Replicate 312.062546303328
Condition 2: 8 Hour
Replicate 111.873055149539
Replicate 211.488246598779
Replicate 310.485092605694
Condition 3: 24 Hour
Replicate 18.0294706884346
Replicate 29.1880317201408
Replicate 38.8617993855813


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27055.p1 GENE.S_Transcript_27055~~S_Transcript_27055.p1 ORF type:complete len:185 (+),score=41.48,RNase_H2_suC|PF08615.7|5.4e-23 S_Transcript_27055:97-651(+)
ATGGAGGAAAGAAATGGTAGAACGATAGGCTGCACAGGAACAATAAATTTCTGTCAATCTCCAAGCTCAGCAGAAGAAGGTGCTGTGGATTTAACTGGACATGTCCACCGCCTTCCTTGTTGCGTCAAATTCAATGGCTCCTCCAATGTCTCCCACTATTTTAAGCCCAAATCTACTGGTATTAAGGTGGATGGCTTAGCAGTAGAGGAAGCTTTCTTTAGGGGTAGGAAATTGGAGGGCGTTACAGTTCCATTGCCCGAGGGTTATTCTGGTTTTATTCTGGGAAAGAAGGACCTTAGTAAGGATAACGCTAGAAAAAATGCTGCTAGAAATAAAGATCCTAAAATATCCAGTGGTAATGAAAATAGTTGGGATATGCTGGCCAAATGTGGGAAATTGACATTCTGGAACCATGATAGTCAACCTTCTCAAGATGATGCCTCTTTGCGCTTGTTTCACTGGCTTGCTGTTGCCAAGGCGCTGCACGAGCCACTGAGTGCTGAAGATTTGAGCTCTGCATCTGCTACTGAAAACCAGATCTCAGAACAAAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27055.p1 GENE.S_Transcript_27055~~S_Transcript_27055.p1 ORF type:complete len:185 (+),score=41.48,RNase_H2_suC|PF08615.7|5.4e-23 S_Transcript_27055:97-651(+)
MEERNGRTIGCTGTINFCQSPSSAEEGAVDLTGHVHRLPCCVKFNGSSNVSHYFKPKSTGIKVDGLAVEEAFFRGRKLEGVTVPLPEGYSGFILGKKDLSKDNARKNAARNKDPKISSGNENSWDMLAKCGKLTFWNHDSQPSQDDASLRLFHWLAVAKALHEPLSAEDLSSASATENQISEQR*

Click here to download the sequence:
Link to NCBI Protein BLAST