Transcript Information: S_Transcript_27060.p1


Annotated TAIR IDAT2G39440.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:16468220-16469113 | Reverse length=162
E-Value6E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4785000686211
Replicate 21.225710530973
Replicate 31.0245964490889
Condition 2: 8 Hour
Replicate 12.6656737896416
Replicate 22.7964810799658
Replicate 31.1842137558323
Condition 3: 24 Hour
Replicate 10.45510173938738
Replicate 21.7312633843043
Replicate 32.452143206053


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_27060.p1 GENE.S_Transcript_27060~~S_Transcript_27060.p1 ORF type:complete len:144 (+),score=27.49,RNase_H2_suC|PF08615.7|2e-17 S_Transcript_27060:97-528(+)
ATGGAGGAAAGAAATGGTAGAACGATAGGCTGCACAGGAACAATAAATTTCTGTCAATCTCCAAGCTCAGCAGAAGAAGGTGCTGTGGATTTAACTGGACATGTCCACCGCCTTCCTTGTTGCGTCAAATTCAATGGCTCCTCCAATGTCTCCCACTATTTTAAGCCCAAATCTACTGGTATTAAGGTGGATGGCTTAGCAGTAGAGGAAGCTTTCTTTAGGGGTAGGAAATTGGAGGGCGTTACAGTTCCATTGCCCGAGGGTTATTCTGGTTTTATTCTGGGAAAGAAGGACCTTAGTAAGGATAAAGCTAGGAAAACTGCTGGTAGAAGTAAACGTCCTGAACTATCCAGTAGTAATGAAAATAGTTGGGATATGCTGGCCAAATGTGGGAAATTGACATTTTGGAACCATGATAGTCAATCTTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_27060.p1 GENE.S_Transcript_27060~~S_Transcript_27060.p1 ORF type:complete len:144 (+),score=27.49,RNase_H2_suC|PF08615.7|2e-17 S_Transcript_27060:97-528(+)
MEERNGRTIGCTGTINFCQSPSSAEEGAVDLTGHVHRLPCCVKFNGSSNVSHYFKPKSTGIKVDGLAVEEAFFRGRKLEGVTVPLPEGYSGFILGKKDLSKDKARKTAGRSKRPELSSSNENSWDMLAKCGKLTFWNHDSQSS*

Click here to download the sequence:
Link to NCBI Protein BLAST