Transcript Information: S_Transcript_271397.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value8E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5874421789406
Replicate 21.3676349082436
Replicate 31.7903474794606
Condition 2: 8 Hour
Replicate 11.4715766417671
Replicate 21.8577792437668
Replicate 31.8199495615949
Condition 3: 24 Hour
Replicate 11.0219828533611
Replicate 21.4313986258746
Replicate 31.4749733570243


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_271397.p1 GENE.S_Transcript_271397~~S_Transcript_271397.p1 ORF type:5prime_partial len:855 (+),score=82.24,RVT_1|PF00078.23|1.5e-44,RVT_3|PF13456.2|1.7e+03,RVT_3|PF13456.2|5.2e-22,zf-RVT|PF13966.2|5.9e-19 S_Transcript_271397:3-2567(+)
TGGACAGACGGGTTTGATGATACTTATCTTGTGTTAATCCCGAAAGTCGACAATCCCCAAAGTATGAAGCAGTTTAGGCCCATATCCCTGTGCAACGTCATATACAAGATTGCTACTAAGGTCGTCACAAACAGAATTAAACCCATCCTGTCCTCCCTTATATCCCCGACGCAAACCAGCTTTGTTCCTGGTCGACAAATTACAGATAATGTGGTAATTGCACAGGAGGTTATCCATACTATGCGTAGGAAGCGTGGCTCATCAGGATTTATGGCTATCAAGATCGATCTCGAGAAGGCCTATGATAGATTGCGTTGGAACTTTATCCGTGACACTCTCTTGGAGATGCGGTTTCCCCAGACTGTAGTGGAAATTATTATGAATTGTGTGACGGGACCAACTATGCGCATATTATGGAATGGTAGCCCAACGGAGCCATTTAGACCATCCAGGGGGATAAGACAGGGCGACCCGCTGTCCCCTTATCTGTTTGTCATGTGTATGGAGCGCCTCCAACACTTGATTGATATTGCGGTGGCGAGAGGCCAGTGGAAGCCCATTCCGGTATGCCGAGAAGGTCCTAGCATTTCAAGCTTGTTCTTTGCGGACGATCTAATCTTATTTGGTGAAGCCTCATGTAGTCAGGCCCAGTCAATGAAAGAGTGCTTGGATGCATTTTGCAAGGCATCAGGAGAGAAAGTTAATCTTGAGAAATCAAGGATCTACTTCTCAGGTAACACGGCTGAAAATATGCGTGAAATGGTTTGTACTGAGATGGGGATTGAAGAATGTGATGACTTGGGAATGTATTTAGGTGTTCCACTCCTCTCTGGCAGGGTGACCCGTGCCACCTATCAGGGAATCAAGGATCGAATTCATGCTAAGCTCTCGGGGTGGAAGGCGAAATGCTTATCTTTGGCTGGCAGGGCGACATTGATTCAATCCACCTTTGCCATACCTTTTTATACAATGCAATCAGCTCGTCTCCCTCGTACCCTCTATGACGACATTGATCGAACATCCAGGAAATTCTTATGGGGTGGTACCAACGGCCAAAGGAAAATCCATCTTACCTCATGGGCCTCGGTGACCCAGGAAAAGGATGCTGGGGGCTTGGGACTCCGCTCCATGCGACAAGCTAATTCAGCGTTCCTCACAAAACTAGGTTGGCGAATGCTTGCGGAGCCAACTGCCCTCTGGTCTAGAGTACTCCGAGCGAAATATTGCCAAGGTCGTTGTGATGTTGATATGTTTGAGCATAAAGTGGGCGCTTCGGCCACTTGGCGGGGGATCATGGAGAATGTCAAATACCTACGGCAAGGCGTCAATGCAGCTATCTCATCAGGGCGCTCTACCCTGTTTTGGTACCATAGATGGGCCTTGGACGAGCCCCTGGCAACAATAGCAACACGTGACATACCTGCAGAGATGGAAGATGCTACGGTAGAGGAAATGTGGAGTGCTGAGCATGGGTGGCGTTGGGAGAAGTTTGCTGACTGGCTGCCCCAAGACGTGCTAGAGAAAATTGAGTCCCATGAAATTCACGAAGATGCTGAAGATGCTGACGTTCTTTATTGGAACGGGAGCACGACTGGTGGTTTCTCGATTAAGTCGGCTCTGAAAATTATCAGGAAGGATTTGGACCTCCCCCCTTGGGCTGGATGGAAGGTTTTGTGGAGTGCCCCGTTACCGCAGAGGATTAGATTTTTCTTGTGGCTAGCAGCTCATGATCGCTTAATGTCTAATGCCAATAGACTGATTAGAGGTCTAGCAGACGATGCTAAGTGCATAATTTGTGGCGCAGAAGAAGAGACAACAAGCCACATACTGAGAGAATGCCCTGCAGCATCGGGGTTATGGCGTAAATTGGGGATAACTGGCTTTGCACTATATGGAACGCCACTGCGTGATTGGCTCAGAGAGCATCTGACTGAAGTTAGAACCAAGAGTGATTGGTCTATAACGTTTGGGGTCACTCTATGGTGGATTTGGAGGTGGAGAAATGAGAGAGTCTTCAATGCTAATGTGAGTCTTCCTTTTGATAAGCTCAAATTCATTTGGGAAAGAGTTAAAGAGGTAAAGCATGCCTTGGGGTTAGAGGAAAAATTATACTCATCCCCTGGTACGGTACGAAGAGACATATTAGTGAGTTGGAGATCCCCGAGACATGGGTGGATGAAACTTAACACTGATGGGGCGTCCCGAGGAAATCCAGGGCCTGCGGGAGGAGGAGGAGTACTACGTGACTCAATGGGATCCTTTATGAGATGCTTCTCCGCCTCTTTTGGTGTATGCTCTAGTATGAAGGCCGAACTTTGGGCTATTCTGAAAGGCCTGACTATGGCGTGGGAGATGGGAGTGCGTGAACTAGAGCTGGAGACTGACTCACAGATTACTGTGCAGCTGTTAACAGGCGCGACACCTCAAGCATCTGGGCTCTTCCATTTGGTGAATAAATGTAGAATGCTGATTAATAAAGAAGGATGGGTGGTTCATGTCTATCACTGCTACAGGGAGGTAAACCAAGTGGCTGATAAGTTGGCGAACATTGGTGTGGATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_271397.p1 GENE.S_Transcript_271397~~S_Transcript_271397.p1 ORF type:5prime_partial len:855 (+),score=82.24,RVT_1|PF00078.23|1.5e-44,RVT_3|PF13456.2|1.7e+03,RVT_3|PF13456.2|5.2e-22,zf-RVT|PF13966.2|5.9e-19 S_Transcript_271397:3-2567(+)
WTDGFDDTYLVLIPKVDNPQSMKQFRPISLCNVIYKIATKVVTNRIKPILSSLISPTQTSFVPGRQITDNVVIAQEVIHTMRRKRGSSGFMAIKIDLEKAYDRLRWNFIRDTLLEMRFPQTVVEIIMNCVTGPTMRILWNGSPTEPFRPSRGIRQGDPLSPYLFVMCMERLQHLIDIAVARGQWKPIPVCREGPSISSLFFADDLILFGEASCSQAQSMKECLDAFCKASGEKVNLEKSRIYFSGNTAENMREMVCTEMGIEECDDLGMYLGVPLLSGRVTRATYQGIKDRIHAKLSGWKAKCLSLAGRATLIQSTFAIPFYTMQSARLPRTLYDDIDRTSRKFLWGGTNGQRKIHLTSWASVTQEKDAGGLGLRSMRQANSAFLTKLGWRMLAEPTALWSRVLRAKYCQGRCDVDMFEHKVGASATWRGIMENVKYLRQGVNAAISSGRSTLFWYHRWALDEPLATIATRDIPAEMEDATVEEMWSAEHGWRWEKFADWLPQDVLEKIESHEIHEDAEDADVLYWNGSTTGGFSIKSALKIIRKDLDLPPWAGWKVLWSAPLPQRIRFFLWLAAHDRLMSNANRLIRGLADDAKCIICGAEEETTSHILRECPAASGLWRKLGITGFALYGTPLRDWLREHLTEVRTKSDWSITFGVTLWWIWRWRNERVFNANVSLPFDKLKFIWERVKEVKHALGLEEKLYSSPGTVRRDILVSWRSPRHGWMKLNTDGASRGNPGPAGGGGVLRDSMGSFMRCFSASFGVCSSMKAELWAILKGLTMAWEMGVRELELETDSQITVQLLTGATPQASGLFHLVNKCRMLINKEGWVVHVYHCYREVNQVADKLANIGVDQ*

Click here to download the sequence:
Link to NCBI Protein BLAST