Transcript Information: S_Transcript_272208.p1


Annotated TAIR IDAT3G62970.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23270636-23272698 | Forward length=287
E-Value1.7E-151
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0152949232027
Replicate 23.6384249445726
Replicate 34.9827743103061
Condition 2: 8 Hour
Replicate 14.7888595799878
Replicate 25.1023514441482
Replicate 34.4127544164698
Condition 3: 24 Hour
Replicate 13.0659485600834
Replicate 24.7713287529152
Replicate 32.7434504440653


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_272208.p1 GENE.S_Transcript_272208~~S_Transcript_272208.p1 ORF type:5prime_partial len:285 (-),score=17.72,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|2.3e+03,zinc_ribbon_6|PF14599.2|1e-24,zf-CHY|PF05495.8|8.8e-21,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|4.8e+02,zf-C3HC4_2|PF13923.2|2.5e+02,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.8e+03,zf-C3HC4_2|PF13923.2|3.2e-08,zf-C3HC4_2|PF13923.2|1.7e+02,zf-RING_2|PF13639.2|5.6e+02,zf-RING_2|PF13639.2|1.3e+04,zf-RING_2|PF13639.2|5.6e+03,zf-RING_2|PF13639.2|4.2e-07,zf-RING_2|PF13639.2|2.8e+02,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.5e-06,zf-C3HC4|PF00097.21|1.6e+04 S_Transcript_272208:8-862(-)
GAAGAAACCTCTTCTGTTCCCGAAAACCGTGAAGACGACAGTTCTGTTCCCGAAAACACCAACCGTGAAGATTTCGGCAAATTGCAATTCGGATGCGAGCATTACAGAAGAAGATGCAGAATAGTAGCGCCGTGTTGCAATCGAGTTTTCACCTGTCGTCACTGCCATAACGAGGCCATGAGCTCAGTAAGCAATCCTAAGGAGAGGCACGAGCTTGTTCGCCATGATGTTAAGCGAGTTGTTTGTGCTGTTTGTGATACTGAGCAACCGGTTGTTAAAGTCTGCTCTAATTGTGGGGTTAATTTGGGAGAGTATTTCTGTCACGTCTGCAAATTTTATGATGACGAGACTAGTAAAAAACAATTCCATTGTGATGATTGTGGGATATGCAGGGTTGGTGGTCGTGAGACCTTCTTCCATTGCCCGAAGTGTGGGTCTTGCTATTCAATGGGTCTCCGTGATAATCACTTGTGTGTGGAGAATGCCATGAAGAATTGTTGTCCCATCTGTTACGAGTATCTTTTCGACTCAATCAAAGGCACAACAGTTATGAGGTGTGGACATACGATACACATGGATTGCTATAATGAGATGTTAAAACAGAAGCAGTACCGATGTCCCATATGCTCCAAGTCGACGGTGGACATGTCTAGAAACTGGGAAAGATTAGATGAGGAGATTGGAGCTACTGCCATGCCTGATGAATATCGATATGAGGTTTTAATCCTCTGCAATGATTGCACCAATATAAGCAGAGTGAAATTTCACATATTTGGTCACAAGTGCAGTCACTGCGGCTCCTACAATACTTGTGTAACCCAGAAATTAGACTCTCAGCAGGAGCCATCAGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_272208.p1 GENE.S_Transcript_272208~~S_Transcript_272208.p1 ORF type:5prime_partial len:285 (-),score=17.72,zinc_ribbon_6|PF14599.2|1.6e+04,zinc_ribbon_6|PF14599.2|2.3e+03,zinc_ribbon_6|PF14599.2|1e-24,zf-CHY|PF05495.8|8.8e-21,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|1.6e+04,zf-CHY|PF05495.8|4.8e+02,zf-C3HC4_2|PF13923.2|2.5e+02,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.8e+03,zf-C3HC4_2|PF13923.2|3.2e-08,zf-C3HC4_2|PF13923.2|1.7e+02,zf-RING_2|PF13639.2|5.6e+02,zf-RING_2|PF13639.2|1.3e+04,zf-RING_2|PF13639.2|5.6e+03,zf-RING_2|PF13639.2|4.2e-07,zf-RING_2|PF13639.2|2.8e+02,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.5e-06,zf-C3HC4|PF00097.21|1.6e+04 S_Transcript_272208:8-862(-)
EETSSVPENREDDSSVPENTNREDFGKLQFGCEHYRRRCRIVAPCCNRVFTCRHCHNEAMSSVSNPKERHELVRHDVKRVVCAVCDTEQPVVKVCSNCGVNLGEYFCHVCKFYDDETSKKQFHCDDCGICRVGGRETFFHCPKCGSCYSMGLRDNHLCVENAMKNCCPICYEYLFDSIKGTTVMRCGHTIHMDCYNEMLKQKQYRCPICSKSTVDMSRNWERLDEEIGATAMPDEYRYEVLILCNDCTNISRVKFHIFGHKCSHCGSYNTCVTQKLDSQQEPSG*

Click here to download the sequence:
Link to NCBI Protein BLAST