Transcript Information: S_Transcript_272209.p1


Annotated TAIR IDAT3G62970.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23270636-23272698 | Forward length=287
E-Value2.1E-127
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.49631332246
Replicate 21.0632669666272
Replicate 30.2962688527486
Condition 2: 8 Hour
Replicate 11.9698151698557
Replicate 23.6837180491116
Replicate 31.369693018794
Condition 3: 24 Hour
Replicate 11.5791482041393
Replicate 20.18203864719958
Replicate 31.620693616393


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_272209.p1 GENE.S_Transcript_272209~~S_Transcript_272209.p1 ORF type:5prime_partial len:249 (-),score=15.60,zf-CHY|PF05495.8|6.7e-21,zf-CHY|PF05495.8|1.6e+04,zf-C3HC4_2|PF13923.2|1.9e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.5e+03,zf-C3HC4_2|PF13923.2|2.6e-08,zf-RING_2|PF13639.2|3e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.5e+03,zf-RING_2|PF13639.2|4e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.9e-06,zf-RING_UBOX|PF13445.2|3.6e+03,zf-RING_UBOX|PF13445.2|7.7e+03,zf-RING_UBOX|PF13445.2|7.4e-06,zf-RING_UBOX|PF13445.2|3.8e+02 S_Transcript_272209:224-970(-)
GAAGAAACCTCTTCTGTTCCCGAAAACCGTGAAGACGACAGTTCTGTTCCCGAAAACACCAACCGTGAAGATTTCGGCAAATTGCAATTCGGATGCGAGCATTACAGAAGAAGATGCAGAATAGTAGCGCCGTGTTGCAATCGAGTTTTCACCTGTCGTCACTGCCATAACGAGGCCATGAGCTCAGTAAGCAATCCTAAGGAGAGGCACGAGCTTGTTCGCCATGATGTTAAGCGAGTTGTTTGTGCTGTTTGTGATACTGAGCAACCGGTTGTTAAAGTCTGCTCTAATTGTGGGGTTAATTTGGGAGAGTATTTCTGTCACGTCTGCAAATTTTATGATGACGAGACTAGTAAAAAACAATTCCATTGTGATGATTGTGGGATATGCAGGGTTGGTGGTCGTGAGACCTTCTTCCATTGCCCGAAGTGTGGGTCTTGCTATTCAATGGGTCTCCGTGATAATCACTTGTGTGTGGAGAATGCCATGAAGAATTGTTGTCCCATCTGTTACGAGTATCTTTTCGACTCAATCAAAGGCACAACAGTTATGAGGTGTGGACATACGATACACATGGATTGCTATAATGAGATGTTAAAACAGAAGCAGTACCGATGTCCCATATGCTCCAAGTCGACGGTGGACATGTCTAGAAACTGGGAAAGATTAGATGAGGAGATAAGCAAAAACATAGAAAGTCATTCTACATGCTTTGCTTATGGGTTGAAGGGATCTTCTTGTTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_272209.p1 GENE.S_Transcript_272209~~S_Transcript_272209.p1 ORF type:5prime_partial len:249 (-),score=15.60,zf-CHY|PF05495.8|6.7e-21,zf-CHY|PF05495.8|1.6e+04,zf-C3HC4_2|PF13923.2|1.9e+02,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.5e+03,zf-C3HC4_2|PF13923.2|2.6e-08,zf-RING_2|PF13639.2|3e+02,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.5e+03,zf-RING_2|PF13639.2|4e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.9e-06,zf-RING_UBOX|PF13445.2|3.6e+03,zf-RING_UBOX|PF13445.2|7.7e+03,zf-RING_UBOX|PF13445.2|7.4e-06,zf-RING_UBOX|PF13445.2|3.8e+02 S_Transcript_272209:224-970(-)
EETSSVPENREDDSSVPENTNREDFGKLQFGCEHYRRRCRIVAPCCNRVFTCRHCHNEAMSSVSNPKERHELVRHDVKRVVCAVCDTEQPVVKVCSNCGVNLGEYFCHVCKFYDDETSKKQFHCDDCGICRVGGRETFFHCPKCGSCYSMGLRDNHLCVENAMKNCCPICYEYLFDSIKGTTVMRCGHTIHMDCYNEMLKQKQYRCPICSKSTVDMSRNWERLDEEISKNIESHSTCFAYGLKGSSCW*

Click here to download the sequence:
Link to NCBI Protein BLAST