Transcript Information: S_Transcript_272345.p5


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.16714234513269
Replicate 30.27943539520607
Condition 2: 8 Hour
Replicate 10.16155598725101
Replicate 21.3558696145289
Replicate 30
Condition 3: 24 Hour
Replicate 10.33098308319082
Replicate 20.34339108449011
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_272345.p5 GENE.S_Transcript_272345~~S_Transcript_272345.p5 ORF type:5prime_partial len:132 (+),score=15.51,UBN2_3|PF14244.2|2.6e-22 S_Transcript_272345:1-396(+)
AACAGTGATGGCGAAAATAAGTCTGTGTCCCCCTTTGCTCTTCACCATGCCGACACTCCGGCCCTTGTCATCTCTCAAGTTGTTCCCAAAGGACGTCAAAACTACTACGAATGGGCCAACACCATTGAATATGCTTTCGCCGCCAAACGCAAAGATGGTTTCCTTGATGGAACCGTGACCAAACCTGCTCATGATTCACCTCATTTTCCTTATTGGAAACCTGTCACTGCCATGTTTCAAACTTGGATCATGAATACTCTATCCCCCGAAGTTTGCTTTCACGTCAACTTCATGAGTAGTGTTCAGGAGTTGTGGCTTTTGCTGAAACGCCGTTATGTCGTCTCTGACCCTATGCGTGTTCATCAAATTCGTGAATCTATTCGTGATTTATCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_272345.p5 GENE.S_Transcript_272345~~S_Transcript_272345.p5 ORF type:5prime_partial len:132 (+),score=15.51,UBN2_3|PF14244.2|2.6e-22 S_Transcript_272345:1-396(+)
NSDGENKSVSPFALHHADTPALVISQVVPKGRQNYYEWANTIEYAFAAKRKDGFLDGTVTKPAHDSPHFPYWKPVTAMFQTWIMNTLSPEVCFHVNFMSSVQELWLLLKRRYVVSDPMRVHQIRESIRDLS*

Click here to download the sequence:
Link to NCBI Protein BLAST