Transcript Information: S_Transcript_272809.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value0.0006
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.4355002058634
Replicate 25.0254131769895
Replicate 34.6106840209001
Condition 2: 8 Hour
Replicate 112.439811018328
Replicate 214.168837471827
Replicate 39.2368672954919
Condition 3: 24 Hour
Replicate 17.5243487578713
Replicate 25.5400428297738
Replicate 35.7450212256098


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_272809.p1 GENE.S_Transcript_272809~~S_Transcript_272809.p1 ORF type:5prime_partial len:180 (+),score=25.61 S_Transcript_272809:2-541(+)
GATAACCGGGGTAGGGGAAAACAAAGGAACAAGGAGGGTCATCATGGGAGAGGGAAGTCAAAGGGCAGGAGTAAATCAAGAGGCAGGGCTGAGATGATCTGTTGGAACTGTAATGGGAAGGGGCATCCCAAAAAGGAGTGTCCAAAACTCAAGAAGAAGGGAGTCGGGCCTAGTAGCAGTAGCCAACATGATAGTGATAGTGACGCTTCGGTAAATTATGCTATAGAAGAGTCACAGGTACAAGATGCCTTGATCTTGAGTGTTGACAGTCCGGTAGAATCCTGGATATTGGATTCGGGGGCATCATTCCACTCTTCACCATGTAAGGAATTGTTTAAGAACTTTCGGACTGGGAAGTTCGGTAGAGTTTACCTGGCCGACGGTAAACCCTTAGAAATTACTGGGAAGGGGGATGTAAGGATCAAAACTTCAAGTGGGAGCATCTGGGAACTGCAGGATGTTAGGTTCATTCCGGGCCTAAAAAAATCTGATTTCAGTGGGGCAATTAGATGCCAGTGGTTACAGAGCTGTGTTTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_272809.p1 GENE.S_Transcript_272809~~S_Transcript_272809.p1 ORF type:5prime_partial len:180 (+),score=25.61 S_Transcript_272809:2-541(+)
DNRGRGKQRNKEGHHGRGKSKGRSKSRGRAEMICWNCNGKGHPKKECPKLKKKGVGPSSSSQHDSDSDASVNYAIEESQVQDALILSVDSPVESWILDSGASFHSSPCKELFKNFRTGKFGRVYLADGKPLEITGKGDVRIKTSSGSIWELQDVRFIPGLKKSDFSGAIRCQWLQSCVW*

Click here to download the sequence:
Link to NCBI Protein BLAST